Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g03444 ATGCCGATCATCAGAAGCATTACAAGAGAATATGTTGGCAAGCCAATAAGATGCAAAGCTGCAATATGCAGAAAATCAGGTGAACCTCTTGTTATAGAAGAAATTGAGTTAGAGCCACCAAAATCATGGGAAGTAAGAATCAAAATCTTATACACATCTCTGTGCCATTCTGATGTCACTTTTTGGAAAATGGATCCTTCTTCACCTGCTGCTATGTTTCCAAGAATTCTCGGACACGAAGCGGTCGGAGTTGTGGAGAGTGTAGGAGAGCATGTTGAGGAAGTGAAAGAAGGAGATTTAGTTGTGCCAGTGTTTCAACCAAACTGTGGAGAATGCATAGACTGTGAGAGTCCAAAAAGCAACATTTGCAGCAAGTTTGGAAACGGAAGAATCGTTAACATGCCAAGAGATGGAACAAGTAGGTTTAGGGACATGAATGGAGAAGTGGTGCATAATTTATTTGGTATCAGCAGTTTTTCTGAGTATACTGTTGTGGATATAACAAATGTGGTTAAAATTAGCCATGATTTTCCTCTTGATAAGGCTTGCTTGCTCAGTTGCGGTGTTTCCACAGGGGTAGGGGCAGTGTGGAAAGTGGCTGATGTAGAAAAAGGGTCCACAGTCGCTGTTTTTGGCCTTGGTGCTGTTGGTCTAGCTGTAGCTGTAGCAGCAAAGCAAAGAGGAGCTTCAACGATTATAGGCGTCGATCTAAATGAGGACAAATTTGAAATAGGAAAACGATTTGGAATAACTGATTTCGTGAATCCTTCCACTTGCAAAGAGAAATCTCTGAGCGAGGTGATTAAGGATATGACAAATGGAGGCGCTGATTATTGCTTCGAGTGCATAGGCTTGGCATCATTAATGGCAGAGGCTTTCAATAGCAGCAGAGATGGTTGGGGGAAGACAGTGATAATAGGGGTGGAAATGCACGGTTCGCCGTTGACATTAAGTCCTTATGACATAATTAGAGGCAAGACTATCACTGGATCACTACTTGGAGGTTTGAAACCAAAGTCTGATATTCCTCTCCTTGCTCAGAAGTACTTAGACAATGAGCTTAACTTGGATGGTTTCATAACACATGAGGTGGACTTCAATGATATTAACAAAGCTTTTGAATATCTCATTCAAGGAAAGAGCATTCGTTGCATTATAAGGATGGATCATTAA 1173 0.4135 MPIIRSITREYVGKPIRCKAAICRKSGEPLVIEEIELEPPKSWEVRIKILYTSLCHSDVTFWKMDPSSPAAMFPRILGHEAVGVVESVGEHVEEVKEGDLVVPVFQPNCGECIDCESPKSNICSKFGNGRIVNMPRDGTSRFRDMNGEVVHNLFGISSFSEYTVVDITNVVKISHDFPLDKACLLSCGVSTGVGAVWKVADVEKGSTVAVFGLGAVGLAVAVAAKQRGASTIIGVDLNEDKFEIGKRFGITDFVNPSTCKEKSLSEVIKDMTNGGADYCFECIGLASLMAEAFNSSRDGWGKTVIIGVEMHGSPLTLSPYDIIRGKTITGSLLGGLKPKSDIPLLAQKYLDNELNLDGFITHEVDFNDINKAFEYLIQGKSIRCIIRMDH 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g03444 390 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 78 92 IPR002328 GO:0008270|GO:0016491
Vifa2g03444 390 FunFam S-(hydroxymethyl)glutathione dehydrogenase 192 331 - -
Vifa2g03444 390 FunFam Alcohol dehydrogenase 6 21 206 - -
Vifa2g03444 390 Pfam Zinc-binding dehydrogenase 215 338 IPR013149 -
Vifa2g03444 390 SUPERFAMILY GroES-like 339 387 IPR011032 -
Vifa2g03444 390 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 178 351 IPR036291 -
Vifa2g03444 390 SUPERFAMILY GroES-like 12 198 IPR011032 -
Vifa2g03444 390 Gene3D - 22 384 - -
Vifa2g03444 390 PANTHER ALCOHOL DEHYDROGENASE 13 386 - -
Vifa2g03444 390 Gene3D - 192 331 - -
Vifa2g03444 390 Pfam Alcohol dehydrogenase GroES-like domain 44 173 IPR013154 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g03444 Vifa-Chr2 994620311 994627979 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g03444 44 187 Monolignol Biosynthesis Gene Families AT4G37970 31.724 2.02e-12 65.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g03444 K00121 - mnt:21395940 542.347