Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g03440 ATGGATGCTCAAGCTCACAATCAGAGAGATCGCAGAATTGATGGTCTTGGAGATCTTCGAGTTCTTCCCGATGAAATCCTCTGCTCAATTTTGGAACGGCTCACTCCTCGAGATGCTGCTCGCGTCGCTTGCGTTAGCAGTGTGATGTATATACTATCCAATGAAGAACCACTGTGGATGACTCTATGCCTACAACTAGCATCTGGTTTTCTTGAATATAAAGGCTCTTGGAAGAAAACTGCCCTGCATAATGAGAATCTGCCAGACAAGTACAAAGAGGGCCATGGACGACCTTTACATTTTGATGGATTCAACTCTTTATTTTTGTATCGGAGATTATACCGGTGTAATACCACATTGGATACATTTTATACCGAAGGTGGAAATGTGGAAAGAATAAAAGACATCTCATTGAAGGACTTCTATAACGAGTATGACGTGAAGAAACCGGTCATGCTTACTGGACTGGCGGATACATGGCCGGCCAGGCATAAATGGACAACTGATCAACTGTTACTAAACTATGGAGACGTGGCGTTTAAAATTTCTCAAAGGAGTTCCAGAAAGATCTCCATGAAATTCAAGGATTATGTCTCGTACATGAAAGTTCAACATGATGAAGAACCTTTGTATATTTTTGACGAAAAGTTTGGCGAACATGCACCTAGCTTATTGAAGGATTACTGTGTGCCTCATCTTTTTCAAGAAGACTTCTTTGATATCTTAGACATAGAGAAACGACCATCCTATAGGTGGCTCATAATTGGACCACAGAGATCTGGTGCCTCTTGGCATGTTGATCCAGCTCTTACAAGTGCATGGAACACTCTTCTTTCTGGTCGTAAAAGGTGGGCACTATATCCTCCTGGAAAAGTGCCTTTAGGTGTTACGGTACATGTTAATGAAGAAGATGGTGATGTCAATATTGAGACTCCATCATCACTGCAGTGGTGGCTAGATTTTTATCCTCTTCTCGCTGAGGAAGACAAACCAATTGAATGTACACAACTACCTGGAGAGACAATTTATGTTCCCAGTGGATGGTGGCACTGTATTTTAAATTTGGAAACAACTATTGCAGTCACGCAGAATTTTGTGAATTCTAATAACTTCGAATTTGTATGTTTGGATATGGCACCTGGTTATCGTCATAAAGGAGTTTGTCGTGTAGGTTTGCTTGCTCTTGAAGAAGATGTTTATGAAAATGGCATACAGGACATGTCATGTAATGAAGAAAATTTAAGTTATTCTGATTTGTCAAGGAAAGAGAAAAGGCCCAAAACTCTGAAAGATGTAGACAATCTATGTTTTGAAAGTGAATTAAGTGCCGTAGCTAGAAGCTATAACTTATGGAAAGGTGGATTTTCTTATGATATTAATTTCTTATCCATGTTTTTGGATAAGGATAGAGACCACTACAGTTCTGAGTGGAGCTCAGGCAACACCATTGGTCAACGAGAACTAAGAGAATGGTTATCCAAGCTTTGGATTCAAAAACCAGAAATGAGAGAACTAATATGGAAGGGAGCTTGTATTGCGCTAAATGCAGATATGTGGTTAGAGTGCCTGTCAAAAATTTGTGCCTTCAATAATTTGCCCCTTCCCACTGATGATGAAAGGCTTCCTGTTGGTTCGGGTAGTAATCCTGTTTATCTAGTGGGGAACTATGTTGTTAAGATTTTTGTCGAAGGAGGACTGGAAGCTTGCCTTTATTGTTTAGGCACAGAGCTACAATTTAATAGTCTGCTGCTTGAAGCCAACTCCTCTATCAGGAAACATATTCCTAGTGTTATGGCCAGTGGGGTTGTTTATCTTGAAGACGGGTCCTATACCAATTTAAGTTGGGATGGAAAAGGAGTTCCCAGTGTCATTTCGAAGACCAATATTATCACAGAGAAATGCAATGTTGATGGTTTCGCATTTGGGGTTTGGGGCAAGAAACTGTTAGAGTATAGGAATGCTGGGATTCCGGTGGATGGATCAATTAGTTTAGCCTGTAACTCAAGCATATGGCCATATGTGATAACTAAGAGATGTGAAGGGAATATGTTTGCAGACTTAAGAGACAGCCTATCGAGGGAAGATACAACAAACTTGGCCTCCTTCTTGGGGGAGCAACTGCGCCACCTTCATCTTTTGCCACATCCACCTTTAAATAATTCATTTATATCTGATATTGAACATGAAATAAGCTGGTCTGAGGAAAATGTTTGTATTTCAAATGTTAATTGTAAATCAAACAATGCAGCAGAATGGGGAATATTCTCCAGAATCTTAACAAAGAAGAGGAAGGACGTCTCAAGTCGTTTGACTAAGGGGGATCCAATTCCTAGCAAACTGATTGAGAAACTTGAGGAATATATCCCATCTGATTTATCTAAGCTGCTAAATATAAATGAGAATTTCTCAAGCGGTGCTTCTAAACCTTGCTGCTGGATACACACTGACATTATGGATGATAATATTTACATGGAACCATCATTGGTTTGCTCTACCTCCAGTGGGAATACAGGAGATGCTGCCCAGGTGGACAATGGTTTATTGAGTGACCATGATGGAGTGAAATCCTGGTGTCCCAGTTACATCCTTGATTTTAGTGATCTTTCTATAGGAGATCCTATTTTTGACTTGATACCAATTTACTTAGATGTGTTTAGAGGCGATTCTTATCTCCTTAAGAAATTCTTAGAAAGTTACAAACTTCCTTTTCCGTGCAACATATCGAAGTGCGAGTTGAAAGAGGGTGGTCAAAAGTTTGGTCGACTTTCATATGCTGCTATGTGTTATTGTATTTTGCATGATGATAATGTCTTGGGAGCTATTTTTGGCATATGGGAAGAACTGAGATCATCAGAGTCATGGGAAGAAGTTGAGATGACGGTATGGGGAGAGTTGAACAATTACAAAGGGTTTCTTTGA 2919 0.3988 MDAQAHNQRDRRIDGLGDLRVLPDEILCSILERLTPRDAARVACVSSVMYILSNEEPLWMTLCLQLASGFLEYKGSWKKTALHNENLPDKYKEGHGRPLHFDGFNSLFLYRRLYRCNTTLDTFYTEGGNVERIKDISLKDFYNEYDVKKPVMLTGLADTWPARHKWTTDQLLLNYGDVAFKISQRSSRKISMKFKDYVSYMKVQHDEEPLYIFDEKFGEHAPSLLKDYCVPHLFQEDFFDILDIEKRPSYRWLIIGPQRSGASWHVDPALTSAWNTLLSGRKRWALYPPGKVPLGVTVHVNEEDGDVNIETPSSLQWWLDFYPLLAEEDKPIECTQLPGETIYVPSGWWHCILNLETTIAVTQNFVNSNNFEFVCLDMAPGYRHKGVCRVGLLALEEDVYENGIQDMSCNEENLSYSDLSRKEKRPKTLKDVDNLCFESELSAVARSYNLWKGGFSYDINFLSMFLDKDRDHYSSEWSSGNTIGQRELREWLSKLWIQKPEMRELIWKGACIALNADMWLECLSKICAFNNLPLPTDDERLPVGSGSNPVYLVGNYVVKIFVEGGLEACLYCLGTELQFNSLLLEANSSIRKHIPSVMASGVVYLEDGSYTNLSWDGKGVPSVISKTNIITEKCNVDGFAFGVWGKKLLEYRNAGIPVDGSISLACNSSIWPYVITKRCEGNMFADLRDSLSREDTTNLASFLGEQLRHLHLLPHPPLNNSFISDIEHEISWSEENVCISNVNCKSNNAAEWGIFSRILTKKRKDVSSRLTKGDPIPSKLIEKLEEYIPSDLSKLLNINENFSSGASKPCCWIHTDIMDDNIYMEPSLVCSTSSGNTGDAAQVDNGLLSDHDGVKSWCPSYILDFSDLSIGDPIFDLIPIYLDVFRGDSYLLKKFLESYKLPFPCNISKCELKEGGQKFGRLSYAAMCYCILHDDNVLGAIFGIWEELRSSESWEEVEMTVWGELNNYKGFL 972
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g03440 972 SMART cupin_9 214 377 IPR003347 -
Vifa2g03440 972 Gene3D Cupin 114 367 - -
Vifa2g03440 972 SMART fbox_2 22 62 IPR001810 GO:0005515
Vifa2g03440 972 ProSiteProfiles F-box domain profile. 16 62 IPR001810 GO:0005515
Vifa2g03440 972 PANTHER ARGININE DEMETHYLASE AND LYSYL-HYDROXYLASE JMJD 16 545 - -
Vifa2g03440 972 Gene3D - 10 93 - -
Vifa2g03440 972 Pfam F-box-like 21 64 IPR001810 GO:0005515
Vifa2g03440 972 SUPERFAMILY Clavaminate synthase-like 118 374 - -
Vifa2g03440 972 SUPERFAMILY F-box domain 8 72 IPR036047 GO:0005515
Vifa2g03440 972 Pfam Phosphotransferase enzyme family 652 881 IPR002575 -
Vifa2g03440 972 ProSiteProfiles JmjC domain profile. 219 382 IPR003347 -
Vifa2g03440 972 Pfam Cupin-like domain 148 369 IPR041667 -
Vifa2g03440 972 FunFam F-box protein At1g78280 110 367 - -
Vifa2g03440 972 SUPERFAMILY Protein kinase-like (PK-like) 671 902 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g03440 Vifa-Chr2 992102749 992112219 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g03440 8 968 Glycosyltransferase AT1G78280 59.835 0.0 1171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Vifa2g03440 APH 2.6e-05 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g03440 - - tpra:123918034 1786.16
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g03440 2 992102749 992112219 Vifa2g03440 2 992102749 992112219 ECH