Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g03439 ATGGATGCTCAAGCTCACAATCAGAGAGATCGCAGAATTGATGGTCTTGGAGATCTTCGAGTTCTTCCCGATGAAATCCTCTGCTCAATTTTGGAACGGCTCACTCCTCGAGATGCTGCTCGCGTCGCTTGCGTTAGCAGTGTGATGTATATACTATCCAATGAAGAACCACTGTGGATGACTCTATGCCTACAACTAGCATCTGGTTTTCTTGAATATAAAGGCTCTTGGAAGAAAACTGCCCTGCATAATGAGAATCTGCCAGACAAGTACAAAGAGGGCCATGGACGACCTTTACATTTTGATGGATTCAACTCTTTATTTTTGTATCGGAGATTATACCGGTGTAATACCACATTGGATACATTTTATACCGAAGGTGGAAATGTGGAAAGAATAAAAGACATCTCATTGAAGGACTTCTATAACGAGTATGACGTGAAGAAACCGGTCATGCTTACTGGACTGGCGGATACATGGCCGGCCAGGCATAAATGGACAACTGATCAACTGTTACTAAACTATGGAGACGTGGCGTTTAAAATTTCTCAAAGGAGTTCCAGAAAGATCTCCATGAAATTCAAGGATTATGTCTCGTACATGAAAGTTCAACATGATGAAGAACCTTTGTATATTTTTGACGAAAAGTTTGGCGAACATGCACCTAGCTTATTGAAGGATTACTGTGTGCCTCATCTTTTTCAAGAAGACTTCTTTGATATCTTAGACATAGAGAAACGACCATCCTATAGGTGGCTCATAATTGGACCACAGAGATCTGGTGCCTCTTGGCATGTTGATCCAGCTCTTACAAGTGCATGGAACACTCTTCTTTCTGGTCGTAAAAGGTGGGCACTATATCCTCCTGGAAAAGTGCCTTTAGGTGTTACGGTACATGTTAATGAAGAAGATGGTGATGTCAATATTGAGACTCCATCATCACTGCAGTGGTGGCTAGATTTTTATCCTCTTCTCGCTGAGGAAGACAAACCAATTGAATGTACACAACTACCTGGAGAGACAATTTATGTTCCCAGTGGATGGTGGCACTGTATTTTAAATTTGGAAACAACTATTGCAGTCACGCAGAATTTTGTGAATTCTAATAACTTCGAATTTGTATGTTTGGATATGGCACCTGGTTATCGTCATAAAGGAGTTTGTCGTGTAGGTTTGCTTGCTCTTGAAGAAGATGTTTATGAAAATGGCATACAGGACATGTCATGTAATGAAGAAAATTTAAGTTATTCTGATTTGTCAAGGAAAGAGAAAAGGCCCAAAACTCTGAAAGATGTAGACAATCTATGTTTTGAAAGTGAATTAAGTGCCGTAGCTAGAAGCTATAACTTATGGAAAGGTGGATTTTCTTATGATATTAATTTCTTATCCATGTTTTTGGATAAGGATAGAGACCACTACAGTTCTGAGTGGAGCTCAGGCAACACCATTGGTCAACGAGAACTAAGAGAATGGTTATCCAAGCTTTGGATTCAAAAACCAGAAATGAGAGAACTAATATGGAAGGGAGCTTGTATTGCGCTAAATGCAGATATGTGGTTAGAGTGCCTGTCAAAAATTTGTGCCTTCAATAATTTGCCCCTTCCCACTGATGATGAAAGGCTTCCTGTTGGTTCGGGTAGTAATCCTGTTTATCTAGTGGGGAACTATGTTGTTAAGATTTTTGTCGAAGGAGGACTGGAAGCTTGCCTTTATTGTTTAGGCACAGAGCTACAATTTAATAGTCTGCTGCTTGAAGCCAACTCCTCTATCAGGAAACATATTCCTAGTGTTATGGCCAGTGGGGTTGTTTATCTTGAAGACGGGTCCTATACCAATTTAAGTTGGGATGGAAAAGGAGTTCCCAGTGTCATTTCGAAGACCAATATTATCACAGAGAAATGCAATGTTGATGGTTTCGCATTTGGGGTTTGGGGCAAGAAACTGTTAGAGTATAGGAATGCTGGGATTCCGGTGGATGGATCAATTAGTTTAGCCTGTAACTCAAGCATATGGCCATATGTGATAACTAAGAGATGTGAAGGGAATATGTTTGCAGACTTAAGAGACAGCCTATCGAGGGAAGATACAACAAACTTGGCCTCCTTCTTGGGGGAGCAACTGCGCCACCTTCATCTTTTGCCACATCCACCTTTAAATAATTCATTTATATCTGATATTGAACATGAAATAAGCTGGTCTGAGGAAAATGTTTGTATTTCAAATGTTAATTGTAAATCAAACAATGCAGCAGAATGGGGAATATTCTCCAGAATCTTAACAAAGAAGAGGAAGGACGTCTCAAGTCGTTTGACTAAGTGGGGGGATCCAATTCCTAGCAAACTGATTGAGAAACTTGAGGAATATATCCCATCTGATTTATCTAAGCTGCTAAATATAAATGAGAATTTCTCAAGCGGTGCTTCTAAACCTTGCTGCTGGATACACACTGACATTATGGATGATAATATTTACATGGAACCATCATTGGTTTGCTCTACCTCCAGTGGGAATACAGGAGATGCTGCCCAGGTGGACAATGGTTTATTGAGTGACCATGATGGAGTGAAATCCTGGTGTCCCAGTTACATCCTTGATTTTAGTGATCTTTCTATAGGAGATCCTATTTTTGACTTGATACCAATTTACTTAGATGTGTTTAGAGGCGATTCTTATCTCCTTAAGAAATTCTTAGAAAGTTACAAACTTCCTTTTCCGTGCAACATATCGAAGTGCGAGTTGAAAGAGGGTGGTCAAAAGTTTGGTCGACTTTCATATGCTGCTATGTGTTATTGTATTTTGCATGATGATAATGTCTTGGGAGCTATTTTTGGCATATGGGAAGAACTGAGATCATCAGAGTCATGGGAAGAAGTTGAGATGACGGTATGGGGAGAGTTGAACAATTACAAAGGGTTTCTTTGA 2922 0.399 MDAQAHNQRDRRIDGLGDLRVLPDEILCSILERLTPRDAARVACVSSVMYILSNEEPLWMTLCLQLASGFLEYKGSWKKTALHNENLPDKYKEGHGRPLHFDGFNSLFLYRRLYRCNTTLDTFYTEGGNVERIKDISLKDFYNEYDVKKPVMLTGLADTWPARHKWTTDQLLLNYGDVAFKISQRSSRKISMKFKDYVSYMKVQHDEEPLYIFDEKFGEHAPSLLKDYCVPHLFQEDFFDILDIEKRPSYRWLIIGPQRSGASWHVDPALTSAWNTLLSGRKRWALYPPGKVPLGVTVHVNEEDGDVNIETPSSLQWWLDFYPLLAEEDKPIECTQLPGETIYVPSGWWHCILNLETTIAVTQNFVNSNNFEFVCLDMAPGYRHKGVCRVGLLALEEDVYENGIQDMSCNEENLSYSDLSRKEKRPKTLKDVDNLCFESELSAVARSYNLWKGGFSYDINFLSMFLDKDRDHYSSEWSSGNTIGQRELREWLSKLWIQKPEMRELIWKGACIALNADMWLECLSKICAFNNLPLPTDDERLPVGSGSNPVYLVGNYVVKIFVEGGLEACLYCLGTELQFNSLLLEANSSIRKHIPSVMASGVVYLEDGSYTNLSWDGKGVPSVISKTNIITEKCNVDGFAFGVWGKKLLEYRNAGIPVDGSISLACNSSIWPYVITKRCEGNMFADLRDSLSREDTTNLASFLGEQLRHLHLLPHPPLNNSFISDIEHEISWSEENVCISNVNCKSNNAAEWGIFSRILTKKRKDVSSRLTKWGDPIPSKLIEKLEEYIPSDLSKLLNINENFSSGASKPCCWIHTDIMDDNIYMEPSLVCSTSSGNTGDAAQVDNGLLSDHDGVKSWCPSYILDFSDLSIGDPIFDLIPIYLDVFRGDSYLLKKFLESYKLPFPCNISKCELKEGGQKFGRLSYAAMCYCILHDDNVLGAIFGIWEELRSSESWEEVEMTVWGELNNYKGFL 973
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g03439 973 SMART cupin_9 214 377 IPR003347 -
Vifa2g03439 973 SMART fbox_2 22 62 IPR001810 GO:0005515
Vifa2g03439 973 ProSiteProfiles F-box domain profile. 16 62 IPR001810 GO:0005515
Vifa2g03439 973 PANTHER ARGININE DEMETHYLASE AND LYSYL-HYDROXYLASE JMJD 16 545 - -
Vifa2g03439 973 Gene3D - 10 93 - -
Vifa2g03439 973 Pfam F-box-like 21 64 IPR001810 GO:0005515
Vifa2g03439 973 Gene3D Cupin 114 367 - -
Vifa2g03439 973 SUPERFAMILY Clavaminate synthase-like 118 374 - -
Vifa2g03439 973 Pfam Phosphotransferase enzyme family 652 882 IPR002575 -
Vifa2g03439 973 SUPERFAMILY F-box domain 8 72 IPR036047 GO:0005515
Vifa2g03439 973 Pfam Cupin-like domain 148 369 IPR041667 -
Vifa2g03439 973 ProSiteProfiles JmjC domain profile. 219 382 IPR003347 -
Vifa2g03439 973 SUPERFAMILY Protein kinase-like (PK-like) 671 903 IPR011009 -
Vifa2g03439 973 FunFam F-box protein At1g78280 110 367 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g03439 Vifa-Chr2 992102749 992112219 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g03439 8 969 Glycosyltransferase AT1G78280 59.938 0.0 1179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Vifa2g03439 APH 1.2e-05 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g03439 - - tpra:123918034 1795.02