Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g03434 ATGGAGAACAACAACAATCCACAACAAGAAGCCCAATATCCACCTCCGCAACCCACGGCGGCACCATTCCAACACCTCTTACAGCAACAACAACAACAGCTTCAAATGTTCTGGTCCTACCAAAGACAAGAAATCGAACACGTCAACGACTTCAAAAACCACCAACTTCCCTTAGCACGCATTAAGAAAATCATGAAAGCCGACGAAGACGTCCGCATGATCTCCGCTGAAGCACCCATCCTCTTCGCTAAAGCTTGCGAGCTTTTCATTCTCGAACTCACCATTCGTTCTTGGCTTCATGCTGAAGAGAATAAACGACGAACCTTGCAGAAGAACGATATCGCCGCTGCTATTACCAGGACTGATATTTTTGATTTTTTGGTTGATATTGTTCCCAGAGATGAGATTAAAGATGAGCCTACCATTGTTGGGGCCACTGCTAGTGGTGTTCCTTATTATTATCCTCCTCTCGGCCAACCTGCGGGGATGATGATTGGTCGCCCGGCGGTTGATCCGGCTACGGGGGTTTATGTTCAGCCGCCTTCTCAGGCTTGGCAGTCTGTTTGGCAGACTGCTGCTGATGATGCTTCTTATGCTGCTGCCGGTGCTGCTGCTAGTGCTCACCACAATGTCGATGGCTAG 642 0.4875 MENNNNPQQEAQYPPPQPTAAPFQHLLQQQQQQLQMFWSYQRQEIEHVNDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDIVPRDEIKDEPTIVGATASGVPYYYPPLGQPAGMMIGRPAVDPATGVYVQPPSQAWQSVWQTAADDASYAAAGAAASAHHNVDG 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g03434 213 MobiDBLite consensus disorder prediction 1 21 - -
Vifa2g03434 213 Gene3D Histone, subunit A 21 133 IPR009072 GO:0046982
Vifa2g03434 213 FunFam Nuclear transcription factor Y subunit gamma 24 133 - -
Vifa2g03434 213 SUPERFAMILY Histone-fold 11 127 IPR009072 GO:0046982
Vifa2g03434 213 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 28 151 - -
Vifa2g03434 213 Pfam Core histone H2A/H2B/H3/H4 3 118 IPR007125 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g03434 Vifa-Chr2 990785879 990786520 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g03434 20 192 CCAAT-HAP5 Transcription Factor Family AT3G48590 85.714 4.04e-103 295
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Vifa2g03434 Histone 1.1e-17 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g03434 - - gmx:100818447 327.02