Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g03424 ATGCATCTTCCTTTCTTTTCTCTCTCAATCTTTTATACTCTCTGGAATAGCAAGTCCTTTTTTGCCTCACTTTCATCACTGTTCCTATCTCTCTCTACACAGTATCTTCAACTTTTTCAATACATTATCCATTATTCTGTGATCCACAATTTCTTAGGCAACGAGTGGTGGTTGAAGGAAGTAGGCATCCTTCTGCTACAATTGTCTGCTACTGCTAGTAGTTATTGTTTCATAAGTATAGGTGAAAACTTGATTATGGAGTGGAATTTGAAAGCATCTTCATGGGATTTGAGTGGTATAGAAGAGGCAACAACATTACCTAACATAGAAACAATGGAAGAATCTAACAGATTTGGAGTTTATAAGAGCAAAGGAGAGTTTTCTGTTGACTTGAAGCTTGGTCAGGTTGGGAATTCTGCTACTGAATCATCATCCTCAGTACCACTTCCTTTGTCCAAAGATGTTTCTGCTTCTGTCTCCAAAATTGCGTCCCCTTCTTCTTCTTCGGGTTCTTTTAAGAGAGCTCGAGCGGTTAATAACACTACATTGACAGTTTCATGTCTTGTGGATGGGTGCAATTCTGATCTTAGTAATTGTAGAGATTATCATAGGCGGCATAAGGTTTGTGAACTTCATTCCAAGACTCCTGAGGTTTCAATTGGTGGACTCAAACAAAGATTCTGCCAACAGTGTAGCAGGTTCCATTCGCTCGATCAATTTGACGAAAGAAAAAGAAGTTGCAGGAAACGTTTAGACGGACACAACCGGAGGAGAAGAAAACCTCAGCCTGAACCTATCACCCGACCTACTGGCAGTTTTTTGTCCAACTACCAAGGCACACAGTTGCTACCCTTTTCAAGTTCTACTGCGATGGTGAATTCAGGTTGGAGTAACGGACTCATTTCTTCCGGTGAAAGTGGTATGCTACACATCCACAATCAACACCAACAAGTTCCTGTAATTGACAAACAAGATCTTTTTCTCGGTTCAACTGCAACCAGTTACGGAGAAGGGAAGCAACTTCAATTCTTACACACGGACAACAACATTCCTTCGCTTCATAACCAGAACTCACCTCTTCTAAGGACAAGTAACAAAATGTTCTGTGATAGCTTAACGAATTCTTCAGTAAACGAATCTCCTTGTGCTCTCTCTCTTCTGTCATCATCACAGACACACACACCTGAGAATGGTTTGAACCAAATGGTGCAGCAGCAGCAGCAGCAGCCTCACTCAATGTCACTTATGCAGCCCTTAGGACTGAGTCTGCATGGTAATAACAACAGCTTTGAATCTATGGATAGAGTTTTGGTCCCTAATGGGAGTGAGAGTGATCATTGTTCTTCATTGTATAACTTGGCTTCGGATGGTTCTCAAGGCAATGAAGCACCTCAACTCTTCCCCTATCAATGGGAATAG 1419 0.4144 MHLPFFSLSIFYTLWNSKSFFASLSSLFLSLSTQYLQLFQYIIHYSVIHNFLGNEWWLKEVGILLLQLSATASSYCFISIGENLIMEWNLKASSWDLSGIEEATTLPNIETMEESNRFGVYKSKGEFSVDLKLGQVGNSATESSSSVPLPLSKDVSASVSKIASPSSSSGSFKRARAVNNTTLTVSCLVDGCNSDLSNCRDYHRRHKVCELHSKTPEVSIGGLKQRFCQQCSRFHSLDQFDERKRSCRKRLDGHNRRRRKPQPEPITRPTGSFLSNYQGTQLLPFSSSTAMVNSGWSNGLISSGESGMLHIHNQHQQVPVIDKQDLFLGSTATSYGEGKQLQFLHTDNNIPSLHNQNSPLLRTSNKMFCDSLTNSSVNESPCALSLLSSSQTHTPENGLNQMVQQQQQQPHSMSLMQPLGLSLHGNNNSFESMDRVLVPNGSESDHCSSLYNLASDGSQGNEAPQLFPYQWE 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g03424 472 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 121 456 IPR044817 GO:0003677
Vifa2g03424 472 Pfam SBP domain 187 260 IPR004333 GO:0003677
Vifa2g03424 472 FunFam Squamosa promoter-binding-like protein 14 178 248 - -
Vifa2g03424 472 MobiDBLite consensus disorder prediction 248 273 - -
Vifa2g03424 472 MobiDBLite consensus disorder prediction 450 472 - -
Vifa2g03424 472 SUPERFAMILY SBT domain 185 266 IPR036893 GO:0003677|GO:0005634
Vifa2g03424 472 ProSiteProfiles Zinc finger SBP-type profile. 184 261 IPR004333 GO:0003677
Vifa2g03424 472 MobiDBLite consensus disorder prediction 450 465 - -
Vifa2g03424 472 Gene3D - 178 248 IPR036893 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g03424 Vifa-Chr2 989124534 989127343 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g03424 86 472 SBP-box Gene Family AT5G50670 40.441 1.36e-65 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Vifa2g03424 SBP 6.9e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g03424 - - gmx:100787407 443.736
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g03424 2 989124534 989127343 Vifa2g03424 2 989124534 989127343 ECH
Vifa2g03424 2 989124534 989127343 Vifa2g03424 2 989124534 989127343 PCT