Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g03418 ATGGGAAGTACAAACATCTCTAGCAATGAACAACCTAATGTAAAGAGAGGAGAACCGATTCGAGTTCAACCGGCGGAAGAAACAGAAAAAGGACTATATTTTCTTTCGAATCTCGACCAGAATATTGCGGTTCCAATGCGTACAGTTTATTGCTTTAAATCAGAATCTAGAGGAAATGAAGAAGCAGTAAAAATTATTAAGGAAGCTTTGTCGAAGATTCTTGTTCCTTATTATCCTATGGCTGGAAAGTTGATTATATGTTCAGAAGGGAAGTTGATAGTGGATAATACAGGAGAAGGTGCAGTTTTTGTTGAGGCTGAAGCTGATTGTGGTGTAGATGAGATTGGTGATTTGAAAAAACCAGATCCTGATAAGCTTGGGAAATTGGTTTATGATGTTCCTGGTGCTAGGAGTATATTGGAGATGCCTCCTATGACCGTTCAGGTAACAAAGTTCAAATGTGGAGGATTCACATTAGGACTCAACATGCTCCATTGCATGAAAGATGGACTATCTGCCATGGAGTTTGTTAATGCATGGGCTCAAACAGCCAGAGGTTTAGACTTAAAACTCCCACCATTTCTCGATCGAACCATTCTCAAATCGCGCGACCCTCCCAAAATCGAGTTCCACCACCACGAATTCGACGAAATCGAAGATCTTTCCAACACCGAAAAAATCTACCAAGGGGAAAAAATCATCCACAAATCCTTCCTTTTCGACCCCGAAAAGCTCGACTCACTCAAGAAAGAGGCCACCGAAGACGGAGTTTTAAAAAAATGTTCGACTTTCGAAGCCCTCTCGGCTTTCGTATGGCGATCAAGAACTTCGGCCTTAAACTTGCATCCTAATCAGCAAACTAAACTCCTCTTCGCCGTCGACGGACGGTCGAGATTCGTCCCGCCGATACCAAAGGGATACTTTGGCAACTCCATTGTGCTAACAAACTCTATGTGCAAAGCAGATGAGTTACTCAAGAACCCTTTTTCATTTTCAGTTGGATTGGTTCACAATGCAATTGATATGATCAATGATAGTTACATGAGATCTGCTATTGATTATTTCGAAGTTACAAGAGCTAGACCTTCTTTAACAGCAACACTTTTGATCACAACTTGGACTAAATTGTCTTTTGACACAACAGATTTTGGTTGGGGGGAACCACTTTGTTCTGGTCCTGTTACATTGCCAGATAAAGAAGTTGTTTTGTTCTTGTCACATGGTCAAGAAAAGAAAAGTATAAGTGTTCTTCTTGGTTTGCCTGCTTCTGCTATGGAACGTTTTGAAGAATTGGTGATTAATATGGTATGA 1311 0.4073 MGSTNISSNEQPNVKRGEPIRVQPAEETEKGLYFLSNLDQNIAVPMRTVYCFKSESRGNEEAVKIIKEALSKILVPYYPMAGKLIICSEGKLIVDNTGEGAVFVEAEADCGVDEIGDLKKPDPDKLGKLVYDVPGARSILEMPPMTVQVTKFKCGGFTLGLNMLHCMKDGLSAMEFVNAWAQTARGLDLKLPPFLDRTILKSRDPPKIEFHHHEFDEIEDLSNTEKIYQGEKIIHKSFLFDPEKLDSLKKEATEDGVLKKCSTFEALSAFVWRSRTSALNLHPNQQTKLLFAVDGRSRFVPPIPKGYFGNSIVLTNSMCKADELLKNPFSFSVGLVHNAIDMINDSYMRSAIDYFEVTRARPSLTATLLITTWTKLSFDTTDFGWGEPLCSGPVTLPDKEVVLFLSHGQEKKSISVLLGLPASAMERFEELVINMV 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g03418 436 FunFam Tryptamine hydroxycinnamoyl transferase 219 433 - -
Vifa2g03418 436 Pfam Transferase family 21 430 - -
Vifa2g03418 436 Gene3D - 9 216 IPR023213 -
Vifa2g03418 436 Gene3D - 217 434 IPR023213 -
Vifa2g03418 436 MobiDBLite consensus disorder prediction 1 22 - -
Vifa2g03418 436 PANTHER TRICHOTHECENE 3-O-ACETYLTRANSFERASE 22 431 - -
Vifa2g03418 436 FunFam Spermidine hydroxycinnamoyl transferase 12 215 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g03418 Vifa-Chr2 985944809 985946641 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g03418 22 435 Monolignol Biosynthesis Gene Families AT5G48930 36.047 2.60e-88 273
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g03418 K15400 - gmx:100794490 691.419