Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g03397 ATGGGTTGCGTGCTTGGGACGGCGGCCGGTGACGGAGATCAACGTCGTCGACGGAGAGAACAGCGTAAGGAGTCTTCTGAAGGAAGAAATAATGTCGTTAGGGTTAAAGAGAAGCAAACGAATCGTCATACTGGAGATTTTCCGGGGAATCTTCCGGCGCTGGAGCACCGGAAACCTATGCTTGATCCGTGTGCCGTGAATCAGCAGGGTTGGCCGTCGTGGTTGATGGCTGTTGCTGGTGAAGCAATCGGCGATTGGACTCCTCGTCGTGCAAACACGTTTGAAAAGCTTGCTAAGATTGGGCAAGGGACGTATAGTAATGTGTACAAAGCTAGGGACCTTATTACAGGGAAGATTGTGGCTTTGAAGAAAGTGAGATTTGATAATTTAGAGCCGGAGAGTGTCAAGTTTATGGCAAGAGAGATACTTGTTTTGAGGAAACTCGATCACCCGAATGTTGTAAAGCTTGAAGGATTGGTTACTTCTAGAATGTCATGTAGTCTTTATTTGGTGTTTGAATATATGGAACATGATCTTGCAGGTCTTTCAGCTGGTCAAGGTGTTAAGTTCACTGAATCTCAGGTCAAATGCTTTATGAAGCAATTACTTTCTGGTCTTGAGCATTGCCACAGTCGAGGTGTGTTGCACCGTGATATCAAGGGTTCCAATCTGCTTATTGACAACGAAGGAATCCTTAAAATTGCAGATTTTGGATTGGCAACTTTTTATAATCCTAAGCAAAAGCAGTGCATGACAAGTAGAGTTGTGACACTTTGGTATCGACCCCCTGAGCTTCTTCTTGGAGCTACATTTTATGGTGTGGGTATTGACCTTTGGAGTGCTGGTTGCATTTTGGCAGAGCTGCTTGCCGGGAAGCCAATCATGCCTGGTCGAACAGAGGTTGAACAACTACACAAAATCTTTAAATTATGTGGCTCTCCAGCTGAGGAATACTGGAGGAAGTATAAATTGCCAAATGCTACTATCTTTAAGCCACAGCAGCCATATAAACGTTGTATCTCAGAAACATTCAAGGATTTTCCTCAATCTTCACTACCTCTAATTGAAACTCTTCTTGCAATCGATCCTGATGGCCGCAGCACTGCCTCAGCTGCTCTAAATCATGAATTTTTTACCACTGAGCCCTATGCTTGTGAACCGTCGAGTTTGCCAAAGTATCCTCCTAGCAAAGAATTGGATGTAAAAATGAGAGATGAAGAAGCTAGAAGGCAAAAAGCACTAAATGGAAAAGCTAATGCAGGCGATGGTGGTAAAAGAGTCAGAGCACGGGAGCGTGGTCGTGCCATGCCGGCCCCAGAAGCCAATGCAGAGATCCAAACAAACTTAGATAGGTGGAGAGTTGTGACCCACGCAAATGGAAAAAGCAAGAGTGAGAAATTTCCACCTCCTCATCAAGACGGAGCTGTTGGATATCCACAAGATTCATCAAGTAAAGGGCCTGTTTCATTTGGTGCCCCAGACACATCCTTTAGTTCAGGGATATTCAATATGAAATCCTCTGGATCTTCAAGAAATCATGACAGTACAGGACTTCACAAAGGGACAATGACTAAAAAAGAAGAGTCTCGAATGGGTTCATCATGGAAATTTATGCGGCCATTCAAGCCATCAACAATTGGACTTTCAATGGATTTATTATTTAGGAGCAAATAA 1674 0.4391 MGCVLGTAAGDGDQRRRRREQRKESSEGRNNVVRVKEKQTNRHTGDFPGNLPALEHRKPMLDPCAVNQQGWPSWLMAVAGEAIGDWTPRRANTFEKLAKIGQGTYSNVYKARDLITGKIVALKKVRFDNLEPESVKFMAREILVLRKLDHPNVVKLEGLVTSRMSCSLYLVFEYMEHDLAGLSAGQGVKFTESQVKCFMKQLLSGLEHCHSRGVLHRDIKGSNLLIDNEGILKIADFGLATFYNPKQKQCMTSRVVTLWYRPPELLLGATFYGVGIDLWSAGCILAELLAGKPIMPGRTEVEQLHKIFKLCGSPAEEYWRKYKLPNATIFKPQQPYKRCISETFKDFPQSSLPLIETLLAIDPDGRSTASAALNHEFFTTEPYACEPSSLPKYPPSKELDVKMRDEEARRQKALNGKANAGDGGKRVRARERGRAMPAPEANAEIQTNLDRWRVVTHANGKSKSEKFPPPHQDGAVGYPQDSSSKGPVSFGAPDTSFSSGIFNMKSSGSSRNHDSTGLHKGTMTKKEESRMGSSWKFMRPFKPSTIGLSMDLLFRSK 557
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g03397 557 PANTHER CELL DIVISION PROTEIN KINASE 92 382 - -
Vifa2g03397 557 MobiDBLite consensus disorder prediction 412 440 - -
Vifa2g03397 557 MobiDBLite consensus disorder prediction 477 517 - -
Vifa2g03397 557 SUPERFAMILY Protein kinase-like (PK-like) 88 383 IPR011009 -
Vifa2g03397 557 MobiDBLite consensus disorder prediction 11 43 - -
Vifa2g03397 557 Gene3D Transferase(Phosphotransferase) domain 1 177 418 - -
Vifa2g03397 557 FunFam probable serine/threonine-protein kinase At1g54610 81 176 - -
Vifa2g03397 557 ProSiteProfiles Protein kinase domain profile. 94 378 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g03397 557 MobiDBLite consensus disorder prediction 458 536 - -
Vifa2g03397 557 Gene3D Phosphorylase Kinase; domain 1 81 176 - -
Vifa2g03397 557 ProSitePatterns Serine/Threonine protein kinases active-site signature. 214 226 IPR008271 GO:0004672|GO:0006468
Vifa2g03397 557 SMART serkin_6 94 378 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g03397 557 FunFam probable serine/threonine-protein kinase At1g54610 177 418 - -
Vifa2g03397 557 CDD STKc_CDK9_like 94 378 - -
Vifa2g03397 557 ProSitePatterns Protein kinases ATP-binding region signature. 100 123 IPR017441 GO:0005524
Vifa2g03397 557 MobiDBLite consensus disorder prediction 1 52 - -
Vifa2g03397 557 MobiDBLite consensus disorder prediction 423 437 - -
Vifa2g03397 557 MobiDBLite consensus disorder prediction 518 533 - -
Vifa2g03397 557 Pfam Protein kinase domain 94 378 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g03397 Vifa-Chr2 978786251 978789914 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g03397 86 412 Core Cell Cycle Gene Families AT5G10270 51.714 2.15e-115 350
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Vifa2g03397 Pkinase 2.5e-69 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g03397 K08819 - gmx:100807756 1006.51