Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g03394 ATGAAGGAATCAACAGAATCAACAGATTCAGACCCAATAACCATTTGCCTCACCCTCACCCACTCACTTCTCCACCAAGAAATCCCCACCGTCCATCACTTAAAAACCAAGTGGTCGATCGCCCGACTCAAACTCACCTCCCTCCAAACCCACCTCACCGATTTCTCCACCGAATATTCCACTTCCTCCACCTCCAACCCCCTCTCCCTCCACCTCCTCCACTCCATCACCCAAACCCTCCACGACGCCGTTTCACTCTCTCACCACTGCCAATCACCCTCCCATTTATCTCTCGGAAAACTTCAAACCCAAAGCCACCTCGACTCCCTCATCGCCACTCTCCACCGTCACCTCAACGACTGCGACGTCCTCTTCCGTAGCGGCCTCCTCCTCGAAACCCCCGCCTTCTCCAAACGAGAAGCCGTTCGATCTCTTTCCAGAAACCTCATCGCACGGTTGCAAATCGGGTCAACCGATTCACGAGCCGCCGCGATTGATTCACTTTTATCCTTACTCCACGAAGACGACAAAAATGTCACTATAGCCGTCGCGCAGGGTGTAGTTCCGGTTCTCGTTCGTTTACTCGACTCCTCTTCTGATATGAAGGAGAAAATCGTCGCTGCTATTTCTAGAGTCTCTACTGTGGACAGTGGGAAGAATAACCTACTCGCGGAGGGGTTGTTGCTGTTGAATCATTTGCTTAGGGTTTTGGATTCTGGAAGTGGTTTAGCTATAGAGAAAGCTTGTATTGCGCTTCAGGCGTTGAGTTTTAGTAGAGATAACGCCAGAGCGATTGGATCTAGAGGTGGGATTTCGTCTCTGTTAGGGATTTGTCAAGGTGGGACTCCTGGTTCACAAGCTTTTGCCGCCGCGGTTTTGAGGAATTTGGCGAAATTTAATGAGATCAGAGAGAATTTTGCGGAGGAGAATGCGGTTGGTGTTTTGTTAGGGTTGGCTTCTTCGGGGACGATATTGGCTCAAGAGAATGCGTTTGGTTGCGTGGCGAATTTGATTTCGGAGGATGAGGGTATGAGGGTTTTGGCTTATAAGGAAGGTGGGATTGAGTGTTTGAAGAATTTCTGGGATTCGGCTCCGATGACTCAGAGTCTTGAAGTTGGTGTTGAAATGTTGAGGTATTTGGCTATGACGGGTCCGATTGCCGAGGTTCTTGTTGCAGAAGGGTTTATTGGGAGGGTGATGGGAGTGTTGAATTGTGAAGTTTTAACAGTGAGGATTGCCGCGGCTAGAGCAGTTTATGCGATGGGTTTGAATGGTGGAAACAAAACCAGAAAGGAAATGGGGGAATGTGGGTGTGTTCCTTTTTTGATTAAGATGTTAGATGGGAAAGGCGTGGAGGAGAAAGAATCCGCTGCAATGGCGTTGTCGGTGTTATTGCAACACCCTTTCAATAGAAGGGTTTTTCGGAAGGATGAGAGGGGAATAGTTAGTGCAGTTCATCTATTGAACCCTTCTTTGGTTAATTTAGATAAGCAGTACCCTGTTTCTGTTCTGGTTTCGCTCTTGCATTCCAAGACTTGTAGGAAACAAATGGTGGCTGCTGGTGCTGGTGTATATACGCAGAAGCTTGTTGAATTGGATGTTCCCGGGTCAAAGAAATTGTCGGATGGACTTGGTCGTGGTAAGATTTGGGGAGTTTTTGCAAGACCCTAA 1671 0.4817 MKESTESTDSDPITICLTLTHSLLHQEIPTVHHLKTKWSIARLKLTSLQTHLTDFSTEYSTSSTSNPLSLHLLHSITQTLHDAVSLSHHCQSPSHLSLGKLQTQSHLDSLIATLHRHLNDCDVLFRSGLLLETPAFSKREAVRSLSRNLIARLQIGSTDSRAAAIDSLLSLLHEDDKNVTIAVAQGVVPVLVRLLDSSSDMKEKIVAAISRVSTVDSGKNNLLAEGLLLLNHLLRVLDSGSGLAIEKACIALQALSFSRDNARAIGSRGGISSLLGICQGGTPGSQAFAAAVLRNLAKFNEIRENFAEENAVGVLLGLASSGTILAQENAFGCVANLISEDEGMRVLAYKEGGIECLKNFWDSAPMTQSLEVGVEMLRYLAMTGPIAEVLVAEGFIGRVMGVLNCEVLTVRIAAARAVYAMGLNGGNKTRKEMGECGCVPFLIKMLDGKGVEEKESAAMALSVLLQHPFNRRVFRKDERGIVSAVHLLNPSLVNLDKQYPVSVLVSLLHSKTCRKQMVAAGAGVYTQKLVELDVPGSKKLSDGLGRGKIWGVFARP 556
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g03394 556 SMART arm_5 426 466 IPR000225 GO:0005515
Vifa2g03394 556 SMART arm_5 175 214 IPR000225 GO:0005515
Vifa2g03394 556 SMART arm_5 258 298 IPR000225 GO:0005515
Vifa2g03394 556 Gene3D - 233 535 IPR011989 -
Vifa2g03394 556 SUPERFAMILY ARM repeat 148 494 IPR016024 -
Vifa2g03394 556 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 15 554 - -
Vifa2g03394 556 Gene3D - 136 232 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g03394 Vifa-Chr2 978265874 978267544 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g03394 144 299 U-box Gene Family AT1G23030 30.380 2.73e-10 61.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g03394 - - gmx:100807228 730.709