Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g03385 ATGGCAGCTTTTTCATATCAATACAATCCTTTCCTTGTTGATCACTCACCATTCATGTTCAACATAAACACTAATTCTCCTCCACTTCCTCTTCCTTCACAGTTTCATCCTCTTCATCAAGATATTATTAACTGTGTTGATCTTCAAAGCTCCAAAGTTCCTACCATCACTGACAATGAACCTTCTTCTCTCACCAAAAACCTTAGTCCTCAATCCTCCATGGTATTGGACAAGCTCGAAACCGGCGACGAGCAAGTTACTCAGAAAATTAACCCTATGGAGAAGAAGAGGAGAACCAGAAACAACGGACCAGCTTCCTCAACTAACCCTAAATCTCATGAAATAGCAGCAGAAGGAAGAAACAAAAAACAGAAGAAAAACAAAGAAGCTGAGAAGCGAAAAGGAGAGAAAAAAGATGAGAGAAAATGTTTGGATGAGCCTCCAACTGGTTACATCCACGTCAGAGCAAGAAGAGGTCAGGCCACTGATAGCCACAGCCTTGCTGAAAGGGTAAGAAGAGAGAAAATAAGTGAAAGGATGAAGAAGTTGCAACAACTTGTGCCAGGCTGTGATAAGGTCACTGGAAAAGCCCTTATGTTAGATGAAATAATTAACTATGTTCAGTCTTTACAAAATCAAGTAGAGTTTTTGTCAATGAAACTTACTTCAGTGAATCCTATGTTCTATGACATGGCAACAGATCTAGACACTTTCATGGTTAGACCAGAGAAATTAAATAACTTAGCATCACCATCACCACTATCATCATCAGTGTCACATTGCAACAGTCCCAAACAAGGCACAGCTTTTGCTGATACAACCACCATGACTCCAACCAACATTTTCCAAACTACTAATGACTACAACCACCTTTTGGATACTTCAGCTTCCGTTTTTCTTCAAAGACAGAGATCAAACGTTGTCTCTGAGGATGGTAGCCATTTTTGGGAGGTAGAAGATCAACGACAAAAGTTTCTTAATTCACATGGATTCAACAACAACTTATGTTCATTTTCATTAATTTAA 1026 0.3908 MAAFSYQYNPFLVDHSPFMFNINTNSPPLPLPSQFHPLHQDIINCVDLQSSKVPTITDNEPSSLTKNLSPQSSMVLDKLETGDEQVTQKINPMEKKRRTRNNGPASSTNPKSHEIAAEGRNKKQKKNKEAEKRKGEKKDERKCLDEPPTGYIHVRARRGQATDSHSLAERVRREKISERMKKLQQLVPGCDKVTGKALMLDEIINYVQSLQNQVEFLSMKLTSVNPMFYDMATDLDTFMVRPEKLNNLASPSPLSSSVSHCNSPKQGTAFADTTTMTPTNIFQTTNDYNHLLDTSASVFLQRQRSNVVSEDGSHFWEVEDQRQKFLNSHGFNNNLCSFSLI 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g03385 341 MobiDBLite consensus disorder prediction 78 149 - -
Vifa2g03385 341 Pfam Helix-loop-helix DNA-binding domain 164 211 IPR011598 GO:0046983
Vifa2g03385 341 MobiDBLite consensus disorder prediction 115 149 - -
Vifa2g03385 341 CDD bHLH_AtBPE_like 150 235 - -
Vifa2g03385 341 SMART finulus 166 216 IPR011598 GO:0046983
Vifa2g03385 341 FunFam Basic helix-loop-helix transcription factor 157 229 - -
Vifa2g03385 341 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 160 210 IPR011598 GO:0046983
Vifa2g03385 341 Coils Coil 120 140 - -
Vifa2g03385 341 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 74 276 IPR024097 GO:0006355
Vifa2g03385 341 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 158 227 IPR036638 GO:0046983
Vifa2g03385 341 Gene3D - 157 230 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g03385 Vifa-Chr2 975226135 975227889 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g03385 101 298 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G50915 52.764 7.36e-58 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vifa2g03385 HLH 2.4e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g03385 - - gmx:100806696 426.017