Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g03384 ATGGCAGCTTTTTCATATCAATACAATCCTTTCCTTGTTGATCACTCACCATTCATGTTCAACATAAACACTAATTCTCCTCCACTTCCTCTTCCTTCACAGTTTCATCCTCTTCATCAAGATATTATTAACTGTGTTGATCTTCAAAGCTCCAAAGTTCCTACCATCACTGACAATGAACCTTCTTCTCTCACCAAAAACCTTAGTCCTCAATCCTCCATGGTATTGGACAAGCTCGAAACCGGCGACGAGCAAGTTACTCAGAAAATTAACCCTATGGAGAAGAAGAGGAGAACCAGAAACAACGGACCAGCTTCCTCAACTAACCCTAAATCTCATGAAATAGCAGCAGAAGGAAGAAACAAAAAACAGAAGAAAAACAAAGAAGCTGAGAAGCGAAAAGGAGAGAAAAAAGATGAGAGAAAATGTTTGGATGAGCCTCCAACTGGTTACATCCACGTCAGAGCAAGAAGAGGTCAGGCCACTGATAGCCACAGCCTTGCTGAAAGGGTAAGAAGAGAGAAAATAAGTGAAAGGATGAAGAAGTTGCAACAACTTGTGCCAGGCTGTGATAAGGTCACTGGAAAAGCCCTTATGTTAGATGAAATAATTAACTATGTTCAGTCTTTACAAAATCAAGTAGAGTTTTTGTCAATGAAACTTACTTCAGTGAATCCTATGTTCTATGACATGGCAACAGATCTAGACACTTTCATGAAATTAAATAACTTAGCATCACCATCACCACTATCATCATCAGTGTCACATTGCAACAGTCCCAAACAAGGCACAGCTTTTGCTGATACAACCACCATGACTCCAACCAACATTTTCCAAACTACTAATGACTACAACCACCTTTTGGATACTTCAGCTTCCGTTTTTCTTCAAAGACAGAGATCAAACGTTGTCTCTGAGGATGGTAGCCATTTTTGGGAGGTAGAAGATCAACGACAAAAGTTTCTTAATTCACATGGATTCAACAACAACTTATGTTCATTTTCATTAATTTAA 1014 0.3895 MAAFSYQYNPFLVDHSPFMFNINTNSPPLPLPSQFHPLHQDIINCVDLQSSKVPTITDNEPSSLTKNLSPQSSMVLDKLETGDEQVTQKINPMEKKRRTRNNGPASSTNPKSHEIAAEGRNKKQKKNKEAEKRKGEKKDERKCLDEPPTGYIHVRARRGQATDSHSLAERVRREKISERMKKLQQLVPGCDKVTGKALMLDEIINYVQSLQNQVEFLSMKLTSVNPMFYDMATDLDTFMKLNNLASPSPLSSSVSHCNSPKQGTAFADTTTMTPTNIFQTTNDYNHLLDTSASVFLQRQRSNVVSEDGSHFWEVEDQRQKFLNSHGFNNNLCSFSLI 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g03384 337 Gene3D - 157 230 IPR036638 GO:0046983
Vifa2g03384 337 MobiDBLite consensus disorder prediction 78 149 - -
Vifa2g03384 337 Pfam Helix-loop-helix DNA-binding domain 164 211 IPR011598 GO:0046983
Vifa2g03384 337 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 73 282 IPR024097 GO:0006355
Vifa2g03384 337 MobiDBLite consensus disorder prediction 115 149 - -
Vifa2g03384 337 FunFam Basic helix-loop-helix transcription factor 157 229 - -
Vifa2g03384 337 CDD bHLH_AtBPE_like 150 235 - -
Vifa2g03384 337 SMART finulus 166 216 IPR011598 GO:0046983
Vifa2g03384 337 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 160 210 IPR011598 GO:0046983
Vifa2g03384 337 Coils Coil 120 140 - -
Vifa2g03384 337 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 158 227 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g03384 Vifa-Chr2 975226135 975227889 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g03384 101 247 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G50915 62.162 1.18e-57 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vifa2g03384 HLH 2.4e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g03384 - - gmx:100806696 413.305
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g03384 2 975226135 975227889 Vifa2g03384 2 975226135 975227889 ECH