Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g03380 ATGACGCAATCAACAATTCCAGCGAGTAATGTTTATAGCTTTGGTGTTTTGTTATTCGAGATAGTAACCGGTCGGATTCCTTATTCGCTGGATAATAGCTCAGCTGAAAACTGGGCAGCACATTATCTAAAATGGGACAAACCTATGAAGGAAATGGTGGATGCAACTCTAGCATCTTACCAAGAGAATCAGGTGGAACAAGTTGCGGAGTTGATAAAAGATTGTGTGGATCCTGATTCGGAGAAGAGACCGAGAATGAATGAAGTGAGTGAGAGATTGAGAGAAATAACGAAAATGTCGTCTGAGTTTGTAGTTCCTAAACTTTCTCCACTTTGGTGGGCTGAGCTTGAGATTTCTTCTGCATAA 366 0.4098 MTQSTIPASNVYSFGVLLFEIVTGRIPYSLDNSSAENWAAHYLKWDKPMKEMVDATLASYQENQVEQVAELIKDCVDPDSEKRPRMNEVSERLREITKMSSEFVVPKLSPLWWAELEISSA 121
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g03380 121 PANTHER PROTEIN MALE DISCOVERER 2 4 120 - -
Vifa2g03380 121 ProSiteProfiles Protein kinase domain profile. 1 104 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g03380 121 Gene3D Transferase(Phosphotransferase) domain 1 1 107 - -
Vifa2g03380 121 Pfam Protein tyrosine and serine/threonine kinase 8 93 IPR001245 GO:0004672|GO:0006468
Vifa2g03380 121 SUPERFAMILY Protein kinase-like (PK-like) 8 113 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g03380 Vifa-Chr2 973365609 973365974 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g03380 9 98 Strubbelig Receptor Gene Family AT4G03390 35.789 2.96e-12 60.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VI-2 Vifa2g03380 PK_Tyr_Ser-Thr 3.1e-09 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g03380 - - gmx:100820416 165.236