Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g03378 ATGGCATTGCCTATGTTACTTCTTCATCTTACTTTTTTCACCTTCAAGGCTTTCTCTTCTCATTCTCATTCTCATCCAGACAGAATCATTTCCCTCCCTGGACAATATCAAAACACAGCCTTTCAACAATTCTCAGGCTATGTCACTGTTGATAAAGAAAAACATAAGTCACTCTTTTACTATTTTGCTGAATCAGAAACTCACCCTTCTTCCAACCCTCTTGTTCTTTGGCTCAATGGTGGACCTGGTTGTTCTTCTCTTGGAGTTGGTGCATTCTCGGAAAATGGACCCTTTAGGCCAAATGGTGATTTCCTTATCAAAAATGAACATAGTTGGAACAAAGAGGCTAATATGCTGTATTTGGAGACACCAATTGGAGTTGGATTCTCTTATGCAAAAGGTAGTTCTGCTTATACAACTACAGTGAATGATGAGGAAACAGCTAGGGACAATCTTGTATTCTTGGAACGCTGGTTTGATAAGTTTCCTCAATATAGAAACAGAGATTTGTTTCTAACTGGTGAAAGTTATGCAGGTCATTATGTTCCTCAACTTGCAAAGCTTATGATTGAAACGAACAAAAGAAACAAGATATTCAATCTCAAAGGCATAGCTTTGGGGAATCCAGTTCTGGAATATGCAACTGATTTCAATTCAAGAGCTGAATTCTTTTGGTCACATGGACTGATATCTGATTCAACTTACAATATGTTCACTAAAGTGTGTAATTATTCTCGCTATGTTAGTGAGTATAATAGAGATTCAGTTTCATCTGTTTGTTCAAATGTTATGGGATTGGTGAGCAAAGAAACCAGTAGATTTGTGGACAAATATGATGTGACTCTTGATGTTTGTATTTCCTCTCTGTTGTCACAATCTAAGGTTATTTCTCCTCAACCTCAACAAGCAAATGAGAGGATAGATGTGTGTGTTGATGACAAGGTTACAAACTACTTAAACAGGAGAGATGTGCAAGAGGCACTTCATGCAAAGCTCGTCGGAGTTCGCAAGTGGGATGTCTGCAGCAATGTTTTGGACTATGATGTGCTTAACTTGGAAGCGCCAACACTTCCTATTGTTGGATCACTGATAAGAGCTGGAATTAAGGTCCTAATTTACAGTGGAGATCAAGACTCAGTGATTCCACTGACTGGAAGCAGAACCTTAGTTCAAAAATTGGCTAGACAAATAGGACTGAATACAACAGTTCCTTACAGAGTCTGGTTTGAGAGACAACAGGTTGGTGGATGGACTCAAGTGTATGGAAATATTCTGTCATTTGCCACAGTGAGAGGTGCTGCACATGAAGCTCCTTTCTCACAGCCAGAAAGATCACTCGTGCTATTCAAATCATTCTTGGAAGGAACCCCTTTGCCTGAAGTTTTCTGA 1389 0.3924 MALPMLLLHLTFFTFKAFSSHSHSHPDRIISLPGQYQNTAFQQFSGYVTVDKEKHKSLFYYFAESETHPSSNPLVLWLNGGPGCSSLGVGAFSENGPFRPNGDFLIKNEHSWNKEANMLYLETPIGVGFSYAKGSSAYTTTVNDEETARDNLVFLERWFDKFPQYRNRDLFLTGESYAGHYVPQLAKLMIETNKRNKIFNLKGIALGNPVLEYATDFNSRAEFFWSHGLISDSTYNMFTKVCNYSRYVSEYNRDSVSSVCSNVMGLVSKETSRFVDKYDVTLDVCISSLLSQSKVISPQPQQANERIDVCVDDKVTNYLNRRDVQEALHAKLVGVRKWDVCSNVLDYDVLNLEAPTLPIVGSLIRAGIKVLIYSGDQDSVIPLTGSRTLVQKLARQIGLNTTVPYRVWFERQQVGGWTQVYGNILSFATVRGAAHEAPFSQPERSLVLFKSFLEGTPLPEVF 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g03378 462 PRINTS Carboxypeptidase C serine protease (S10) family signature 108 120 IPR001563 GO:0004185|GO:0006508
Vifa2g03378 462 PRINTS Carboxypeptidase C serine protease (S10) family signature 121 131 IPR001563 GO:0004185|GO:0006508
Vifa2g03378 462 PRINTS Carboxypeptidase C serine protease (S10) family signature 158 183 IPR001563 GO:0004185|GO:0006508
Vifa2g03378 462 PRINTS Carboxypeptidase C serine protease (S10) family signature 425 438 IPR001563 GO:0004185|GO:0006508
Vifa2g03378 462 SUPERFAMILY alpha/beta-Hydrolases 29 459 IPR029058 -
Vifa2g03378 462 FunFam Carboxypeptidase 356 455 - -
Vifa2g03378 462 ProSitePatterns Serine carboxypeptidases, serine active site. 172 179 IPR018202 GO:0004185
Vifa2g03378 462 Pfam Serine carboxypeptidase 33 455 IPR001563 GO:0004185|GO:0006508
Vifa2g03378 462 Gene3D alpha/beta hydrolase 27 459 IPR029058 -
Vifa2g03378 462 FunFam Carboxypeptidase 22 459 - -
Vifa2g03378 462 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 30 442 IPR001563 GO:0004185|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g03378 Vifa-Chr2 972379610 972382490 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g03378 318 458 Calmodulin-binding Proteins AT2G22960 28.369 9.90e-16 73.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g03378 K16297 - gmx:100795668 786.563
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g03378 2 972379610 972382490 Vifa2g03378 2 972379610 972382490 ECH