Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g03377 ATGTCAAATGAGCTACAAAACCAAAACCCTGAAGCACAAAACCAGGATAAAGAGCAATTCGAATCAGAGGGACCATCGCCCCTAACCGTTACTTCGCGGGTTTTGTATATGTTGGAAGACATTACTCATTGGCTTCAATCCGTTCGAAAACGCACTTCCAATTACCGCTCCTCCGGTTTCCCTCGCTCTTCTTCCACCATACCCTTCTGTCTCGGAGAATCGGCAGAGGATGCAGAAATTAATATGCTTCCTGATCAAACTGAAATTAGCGTGTGGGATCGGCTGGGTAAAGCAGAAATGTTGGACATTGAATCCAGTTCCTTTACTTGGGACATGCTGTCTTCACTTCACCATACTGAGCACACCAGTAGCAATGATCATTCTGAGGATGAAATGAATAGAGCTCTTGAGATGACAGTAAATTCTGGAGGGGTTGTCTTCTTTGCCCTTTTCAATGTCGACAGGAGCGATGATGCTTCTCCAAAAGAAGCAGCAGCAGTCATAAAGATATCTTCGTCAAGAATGGCAACACAGTCTGAACGACTTGGATATGAATTCGCCAAATGGTTGGGAGTCCAAGCTCCGCAGGCTAGAGTCATTCACAATACCTGTTTAGAATGGCTCCAAATAAAGAAAGCCGCAGAAAAAGCAAGGGATGCAGCAAGTTGTGAGAGTGATGAAATTGGTGAAACGACCTGTTCTGAACTTTTGGAAGCGCTTGAGCTTAGCAAGTGTCTCTTGTTTATGAGTTATGTACATGGCTCACCTTTACTTGAAAGCTCTGCCGCATTTGAATCAAGGGACTCTGCAGAAAGAACGTCAGCAGCACTTGGCAGGATAATGATGCTAGATCTTGTTATCAGAAATGAAGATAGGCTTCCATGCCGTCAACTTAGATGGCGTGGGAACCCTGCGAATTTGTTATTGGCTAAAAAAGCAATGCCTTCCAATTTAGATACAATAGGAGAAACCTCTGACTTGATAATGAACCGATACGGGTCCGCGATGGTTGGGACGCTTCAAGAAAAAAAAAAGTCCACTTCAAGATTGTTTTCTCAAAATAATAATGGAATAAGATCACAAGGCTCTCATCTTTCACAAATAAGAGAATCATCTGATGACTTGTGCCTTAAAAGTCAAACATCAAGAGAATCAATGTTTACTGGCTCCAACATTGTTGCCATTGACTCTGGTGTTCCTCGTCGACCTCCTGCCATAAAACGTGCAGATGATCAGATAAGTTATCCTAAGTTGGTTGAGTTAGTACTAAATAGCTCTGAGTTTTCCTCTTGCCTGTTACATGATATAACTGGAGGGAAATTAGGAAATCATCTCGTAGAAGACATAAATTTAATCGTTGACGTAGAAGGGAGTGATATAACATCAATAGTTCATGAGTTCCGCAGTGGTTTCCGTGCTGCTCTTAGGGATCTGCAAGGATTTCATATATTCCTACTTACACTTCACCAAAAACTTGATAACTTGTTACGATCATTTAATAATACTATAAGCAAAATATCACCTGGGGAGTCTGAAAAGGAAGATTCACCTTCACCTGCTACTGGTAGTTGTCTCTCTCCAACAAGAAAGGAGAGATTTTCTAATGATAGCCATCGAGATTTTAGTGATTCAGATTCGCAGAGGTCTGCTCCAAGGGCATCTTCAGGTAATAGAAATTTTTGTGACTCTGCTTCTCCTATGTCAAGAGAAGGTTGCCATGGAAAATCCTCTAAAGGGAGTGTGGAGCCATTACATGATTCCCATTTTACAGCTAAGCTCCGCGACTTCCATAAATTTGCTAAGGTTGATGCAGAATCTTATAAAGAATTGGAACATTGGAATGAAATGCTTAAAAATGATGCTATCAAGTTATGTCAGGAAAACAATTTCAATTCAGGATTTTTTGAGGGAAGTGATAGCAACACCGTTGTTGATGCATATGAATTGAAGATCAGACTTGAACATATCCTTGAAAGGATTGCATTGATATCTGAGGCTGCAAATACTGAGAGACCATCTGCTATTACAAATTATTTGTTCATCGGTGGAGCGCTATCTGCAAGATCTATATATACAATGCAACACTTGGGAATCAATCATATCTTGTGTTTGTGCACTAACGAAATTGGACAATCAGATTCTCAGTTTCCTGATCTTTTCACCTACAAAAATTTCTTTGTATGTGACACTGAGAATTCTAACATCAGCCTCTTATTTGAAGAAGCTTGTGATTTTATAGAAGATGTTGAGAGAGCGGGTCAGGGAATTCTAGTTCATTGTTTTGAAGGGAAAAGCAGAAGTGTCACTGTAGTCCTTGCTTACTTGATGCTAAGAAAGAACTTCACATTATTAGAAGCATGGAATGCTATGAAAAAAGTTCACCGTCGAGCACAGCCGAATGACGGTTTTGGAAAGATCTTACAGGAACTTGATCAAAAACTGCATGGGAAGGTTTCAATGGAGTGGCGGAGGCGGAGACCAACAATGAAAGTTTGTCCTATATGTGGCAAGAATGCTGGACTGAGTAGCAGCTCACTTAAGCTCCATCTTCAGAAATCACATAAAAAAAGACTATCATCAGGGAGTGTAGATAGTGCCATGAAAAAGGAAATCCAAAAGGCATTAACCACTCTGAATATTAGCCGTGGTGGGAGTGTGAGCCCCACACACAGGCTGTCCCATTCAATGACAGATTAA 2697 0.409 MSNELQNQNPEAQNQDKEQFESEGPSPLTVTSRVLYMLEDITHWLQSVRKRTSNYRSSGFPRSSSTIPFCLGESAEDAEINMLPDQTEISVWDRLGKAEMLDIESSSFTWDMLSSLHHTEHTSSNDHSEDEMNRALEMTVNSGGVVFFALFNVDRSDDASPKEAAAVIKISSSRMATQSERLGYEFAKWLGVQAPQARVIHNTCLEWLQIKKAAEKARDAASCESDEIGETTCSELLEALELSKCLLFMSYVHGSPLLESSAAFESRDSAERTSAALGRIMMLDLVIRNEDRLPCRQLRWRGNPANLLLAKKAMPSNLDTIGETSDLIMNRYGSAMVGTLQEKKKSTSRLFSQNNNGIRSQGSHLSQIRESSDDLCLKSQTSRESMFTGSNIVAIDSGVPRRPPAIKRADDQISYPKLVELVLNSSEFSSCLLHDITGGKLGNHLVEDINLIVDVEGSDITSIVHEFRSGFRAALRDLQGFHIFLLTLHQKLDNLLRSFNNTISKISPGESEKEDSPSPATGSCLSPTRKERFSNDSHRDFSDSDSQRSAPRASSGNRNFCDSASPMSREGCHGKSSKGSVEPLHDSHFTAKLRDFHKFAKVDAESYKELEHWNEMLKNDAIKLCQENNFNSGFFEGSDSNTVVDAYELKIRLEHILERIALISEAANTERPSAITNYLFIGGALSARSIYTMQHLGINHILCLCTNEIGQSDSQFPDLFTYKNFFVCDTENSNISLLFEEACDFIEDVERAGQGILVHCFEGKSRSVTVVLAYLMLRKNFTLLEAWNAMKKVHRRAQPNDGFGKILQELDQKLHGKVSMEWRRRRPTMKVCPICGKNAGLSSSSLKLHLQKSHKKRLSSGSVDSAMKKEIQKALTTLNISRGGSVSPTHRLSHSMTD 898
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g03377 898 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 740 792 IPR000387 GO:0016311|GO:0016791
Vifa2g03377 898 Gene3D - 256 507 IPR036940 -
Vifa2g03377 898 FunFam Dual specificity protein phosphatase PHS1 643 817 - -
Vifa2g03377 898 PANTHER DUAL SPECIFICITY PROTEIN PHOSPHATASE PHS1 13 897 IPR035010 GO:0004721|GO:0009737|GO:0043622
Vifa2g03377 898 SMART dsp_5 671 813 IPR020422 GO:0006470|GO:0008138
Vifa2g03377 898 MobiDBLite consensus disorder prediction 547 564 - -
Vifa2g03377 898 MobiDBLite consensus disorder prediction 1 26 - -
Vifa2g03377 898 Pfam Dual specificity phosphatase, catalytic domain 684 811 IPR000340 GO:0008138|GO:0016311
Vifa2g03377 898 SUPERFAMILY Protein kinase-like (PK-like) 43 413 IPR011009 -
Vifa2g03377 898 ProSiteProfiles Dual specificity protein phosphatase domain profile. 671 816 IPR020422 GO:0006470|GO:0008138
Vifa2g03377 898 MobiDBLite consensus disorder prediction 504 583 - -
Vifa2g03377 898 MobiDBLite consensus disorder prediction 514 530 - -
Vifa2g03377 898 Pfam Actin-fragmin kinase, catalytic 88 322 IPR015275 -
Vifa2g03377 898 Gene3D Protein tyrosine phosphatase superfamily 654 825 IPR029021 -
Vifa2g03377 898 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 671 816 IPR029021 -
Vifa2g03377 898 CDD DSP 672 809 - -
Vifa2g03377 898 MobiDBLite consensus disorder prediction 531 546 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g03377 Vifa-Chr2 971972238 971977395 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g03377 21 883 Protein tyrosine phosphatase (PTP) family AT5G23720 60.918 0.0 989
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g03377 K14165 - gmx:102661225 1235.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g03377 2 971972238 971977395 Vifa2g03377 2 971972238 971977395 ECH