Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g03376 ATGTCAAATCAGCAACAACACCGCCGTGAAGCCTCCGAGCAACCACGCCGCCGTGAAGCATCCGAACTACAACACCGCCGTGAAGCAGCATTACCCATCACTATCTCTTTGCATGATCAGATGAAATTTCAGGATAAAGACCAATTCGAGTCACCCCTAACCGTTACTCAGTGGCTTCGATCAGTTCGCAAACGCACTTCCAATTCCAATTCCGGTTTCCCTCGCACTTCTTCCACCATACCCTTTTGTTTTAGAGAGGATGCAGAAATTGACATGCTTCCGGATCATACTGAAATTAGTGTGTGGGATAGGCTTGGTAAAGCTGAAATGTTGGACATTGACTCCCATTCCTTTTCTTGGGACACGCTCTCTTCACTTCATCACACTGAACACACTAATAGCAATCAACATTCTGATGACGAAGTCAATAGAGCTCTTGAGATCACAGTAAATTCTGGAGGGGTTGTCTTCTTTGCCCTTTTCAATGTCGATGGGAGCGATGATGCTTCTCCAAAAGAAGCAGCAGCTGTCATAAAGATATCTTCGTCAAGAATGGCAACACAGTCAGAAAGACTAGGATACGAATTCGCCAAATGGTTGGGAGTCCAAGCTCCACAGGCTAGAGTCATTCACAATACCAGTTTAGAATGGCTCCAAATAAAGAAAGCTGCAGAAAAAGCAAGGGATGCAGCAAGTTGTGAGAGTAATGTAATTGGTGAAACAACATGTTCTGAACTTTTGGAAGCACTCGAGCTTAGCCGGTGTCTCTTGTTTATGAGTTATGTACATGGCTCGCCTTTACTTGAAAGCTCTAGTGCATTTGAATCAAGGGATTCTGCAGAAAGAACGTCTGCAGCGCTTGGTAGGGTAATGATGCTAGATCTTGTTATTAGAAATGAAGATAGGCTTCCATGCCGTCAACTTAGATGGCGTGGGAACCCAGCAAATTTGTTATTAGCTGAAAAATCAATCCCTTCAAATTTAGATACAATAGGAGAAACCTTTGAGTTGGCAATGAGCCGATATGGGCTCGGGGTGGTTGGTAAAAGAAGATCTACTTCAAGATTGTGTTCTCGTGATAATAGAATAAGATCACAAGGCTCTCATCTTTCACGGATAAGAGAATCATCCAATTACATGTGCCTTAAAAGTCAAACGTCAGGAGAATCAATGTTTAATGGCTTCAACATTGTGGCTATTGACTCTGGTGTTCCACGTCGACCTCCTGCTGTAAAACGTGCTGATGATCAGGTCAGCTATCCTAAGTTGGTTGAATTGGTACTAAATAGTTCTCAGTTTTCCTCTTGCCTGTTATATAATATAACCGGCGGGAAATTAGGAAGTCCTCCCTTAGAGGATATAACTTTAACGGTCGACATACAAGGGAGTGTTGTAACATCAGTAGTACACCAGTTCCGCAGTGGTTTTCGTGCTGCTCTTAGGGACCTGCAAGGATTTCATATATTCTTACTTACACTTCACCAAAAACTTGATAACTTATTACGATCATTTAATAATACTATAAGCAAAGTATCATTGGGGGAGTCTGAAAATGGAGATTCACCTTCATCAGCTACCAGTAAGTGCCACTCTTCAACAAGTAAGGGGAGATTTTCTAATGATAGCCATGGAGATTTTAGTGATTCAGATTCACAAAACTCTGCTCCAAGGGCATTGTCATCCTCAGGCAATAGAAATCTTTGTGACTCTATTTCTCCTATGTCAAGAGAAGGTTCCCATGGAAAATCCTCCAAAGGGAGTGTGGGGCCATTGCGTGATTCCTGTTTTACAGCTAAGCTCCGTGAGTTCCATAAATTTGCCAAGGTTGATGCAGAATTTTATAAAGAATTAGAACATTGGAATGAAATGCTCAAAAATGATGCTATCAAGTTGTGCCAGGAGAACAATTTCAATTCAGGATTTTTTGAAGGAAGTGATAGCAATACTATTGTTGATGCATATGAATTGAAGATTAGACTTGAGCATATTCTTGAAAGGATTGCATTGATATCTGAGGCTGCAAATACAGAGAGACCATCTGCTATTACAAATTATTTGTTCATCAGTGGAGTACTATCTGCAAGATCTATATACACAATGCAACACTTAGGAATCACTCATATTCTGTGTTTGTGTACTAACGAAATTGGACAATCAGATTCTCAATTTCCTAATCTATTCACTTACAAAAATTTCTTTGTACTTGACACCGAGAGTTCTAACATCAGCATCTTATTTGACGAAGCTTGTGATTTTATAGAAGATGTTGAGAGAGCGGGTCAGAGAATTCTAGTTCATTGCTTCGAAGGGAAAAGCAGAAGTGTCACCGTAGTCCTTGCTTATTTGATGCTAAGAAAGAATTACACACTATTAGAAGCATGGAATGTTATGAAAAAAGTTCACCGTCGAGCACAGCCGAATGACGGTTTTGGAAAGATCTTACAAGAACTTGATCTAAAACTGCATGGGAAGGTTTCAATGGAGTGGCGGCAGCGTCGGAGGCCAACAATGAAAGTTTGTCCAATATGTGGCAAGAATGCTGGACTGAGTAGCAGCTCACTTAAGCTCCATCTTCAGAAATCACATAAAAGACTATCATCAGGGAGTGTAGATAGTGCCATGACAATGGAAATCCAAAAGACATTGACCACTTTGAATATCAGCAGTGGTGGGAATTCGAGCCCCACACACAGGCAATCTCATTCGATGACACATTAA 2718 0.4106 MSNQQQHRREASEQPRRREASELQHRREAALPITISLHDQMKFQDKDQFESPLTVTQWLRSVRKRTSNSNSGFPRTSSTIPFCFREDAEIDMLPDHTEISVWDRLGKAEMLDIDSHSFSWDTLSSLHHTEHTNSNQHSDDEVNRALEITVNSGGVVFFALFNVDGSDDASPKEAAAVIKISSSRMATQSERLGYEFAKWLGVQAPQARVIHNTSLEWLQIKKAAEKARDAASCESNVIGETTCSELLEALELSRCLLFMSYVHGSPLLESSSAFESRDSAERTSAALGRVMMLDLVIRNEDRLPCRQLRWRGNPANLLLAEKSIPSNLDTIGETFELAMSRYGLGVVGKRRSTSRLCSRDNRIRSQGSHLSRIRESSNYMCLKSQTSGESMFNGFNIVAIDSGVPRRPPAVKRADDQVSYPKLVELVLNSSQFSSCLLYNITGGKLGSPPLEDITLTVDIQGSVVTSVVHQFRSGFRAALRDLQGFHIFLLTLHQKLDNLLRSFNNTISKVSLGESENGDSPSSATSKCHSSTSKGRFSNDSHGDFSDSDSQNSAPRALSSSGNRNLCDSISPMSREGSHGKSSKGSVGPLRDSCFTAKLREFHKFAKVDAEFYKELEHWNEMLKNDAIKLCQENNFNSGFFEGSDSNTIVDAYELKIRLEHILERIALISEAANTERPSAITNYLFISGVLSARSIYTMQHLGITHILCLCTNEIGQSDSQFPNLFTYKNFFVLDTESSNISILFDEACDFIEDVERAGQRILVHCFEGKSRSVTVVLAYLMLRKNYTLLEAWNVMKKVHRRAQPNDGFGKILQELDLKLHGKVSMEWRQRRRPTMKVCPICGKNAGLSSSSLKLHLQKSHKRLSSGSVDSAMTMEIQKTLTTLNISSGGNSSPTHRQSHSMTH 905
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g03376 905 SUPERFAMILY Protein kinase-like (PK-like) 58 417 IPR011009 -
Vifa2g03376 905 MobiDBLite consensus disorder prediction 513 589 - -
Vifa2g03376 905 MobiDBLite consensus disorder prediction 9 25 - -
Vifa2g03376 905 Gene3D - 267 514 IPR036940 -
Vifa2g03376 905 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 678 823 IPR029021 -
Vifa2g03376 905 SMART dsp_5 678 820 IPR020422 GO:0006470|GO:0008138
Vifa2g03376 905 PANTHER DUAL SPECIFICITY PROTEIN PHOSPHATASE PHS1 17 904 IPR035010 GO:0004721|GO:0009737|GO:0043622
Vifa2g03376 905 MobiDBLite consensus disorder prediction 513 582 - -
Vifa2g03376 905 Gene3D Protein tyrosine phosphatase superfamily 661 833 IPR029021 -
Vifa2g03376 905 Pfam Actin-fragmin kinase, catalytic 98 336 IPR015275 -
Vifa2g03376 905 CDD DSP 679 816 - -
Vifa2g03376 905 FunFam Dual specificity protein phosphatase PHS1 650 824 - -
Vifa2g03376 905 Pfam Dual specificity phosphatase, catalytic domain 698 816 IPR000340 GO:0008138|GO:0016311
Vifa2g03376 905 MobiDBLite consensus disorder prediction 885 905 - -
Vifa2g03376 905 ProSiteProfiles Dual specificity protein phosphatase domain profile. 678 823 IPR020422 GO:0006470|GO:0008138
Vifa2g03376 905 MobiDBLite consensus disorder prediction 1 25 - -
Vifa2g03376 905 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 747 799 IPR000387 GO:0016311|GO:0016791
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g03376 Vifa-Chr2 971813892 971819001 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g03376 28 890 Protein tyrosine phosphatase (PTP) family AT5G23720 58.903 0.0 946
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g03376 K14165 - gmx:102661225 1142.87