Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g03372 ATGCCCTTTTCCTTCTGCAACATCTTCCTACTTTTTCACCTTTTTTACTTTCTTCTTCTTCCTTTTAACAACCCCTCTCTCTCTCTCTCTAGAATGAACACCAACAACAACACTGGTTGGATGGAAGAAAGAGAAGGTGAAAACACCACTACTTCACCTTCTTCATGGCCTAATACTAACCCAAACACTCCTTCTTCATCTGCTTCACCTTTTCTCCAAAACAAACAACATTTCGCTACTTTCAAAACCATGCTTGAAATCGATGCTGATGAGTGGTATATGAAAGACATGGCTTTTCCACCTAACTTGGATACGGTTTTACTCAACACTGTTGATTCTGTTACTTCCTCTTCATGTTCACCTTCTTCCTCCGTTTTCAACGCACTTGATCCTTCACTGTCGAATCTTCAGTATCTGCTTCCTCAGAATCATAAACCTGTTGATACTCTTTCTTCTCTTCTCAACAACCCTTTTGAGATTCCATCTGAATTTGGTTTTCTTGAACCTCAAGGTTCAGCATTACCCCCTTCTTCAAAAATGGGTGGTTTGGTTGATTTCGCAGCTACTGAGATGATGAGTTTGCCCCATTTGCCTCAAACTAGCAATGGGTTCATGGGGTTTCAGAACTCGGAAGAGGGTTCTGGAAAGTCGCTGTTTTTGAACAGGTCCAAGGTTTTGAGACCGCTTGATTCTTTGCCTCCTTCTGGAACACAGCCTACTCTCTTTCAGAAGAGAGCGGCATTGAGAAAGAACATGGGGAAGGGTGAAATTGGGGAAGGGAGTGATAAGAAAAGGAAGTTTAGCGGTGGAGATGAAATTGATGATTTGAGTTTTGATGGGTCTGGTTTGAACTATGATTCTGATGATTTGACTGAGACTAATGGCAAAAACTTTGGAAATGCTTCCAATGGAAACAGCACTGTCACTGATCAGAAGGGGAAGAAGAAAGGAATGCCTGCTAAGAATTTGATGGCCGAGCGTCGCCGGAGGAAGAAGCTCAATGATAGACTCTATATGCTGAGGTCTGTTGTTCCAAAGATTAGCAAAATGGATAGGGCTTCAATTCTTGGGGATGCAATTGAGTATTTGAAGGAACTTCTGCAAAGGATAAAGGACCTTCATAATGAGTTGGAATCAACACCTGCTGGATCTTCACTAACACCTGCTTCAAGCTACCATCCGTTGACACCGACTGCATCTTCTTTGCCTAGCCGTATCAAGGAAGAGCTATGTCCCAGCTCATTGCCAAGCCCCAATGGCCAACCTGCCAGGGTTGAGGTTCGGTTGCGGGAAGGAAGAGCTGTAAACATCCACATGTTTTGTGCCCGCAAACCTGGTCTGTTACTCTCAACCATGAGCGCTTTGGATAGCCTTGGATTAGACGTTCAGCAAGCTGTTATAAGCTGTTTCAATGGATTTGCTATGGACATTTTCAAAGCCGAGCAATGCAATGAAGATCAAGATGTTCATCCGGAGCAAATCAAAGCAGTACTGTTGGATTCAGCTGGTTTTAATGGCATGATCTAA 1527 0.4322 MPFSFCNIFLLFHLFYFLLLPFNNPSLSLSRMNTNNNTGWMEEREGENTTTSPSSWPNTNPNTPSSSASPFLQNKQHFATFKTMLEIDADEWYMKDMAFPPNLDTVLLNTVDSVTSSSCSPSSSVFNALDPSLSNLQYLLPQNHKPVDTLSSLLNNPFEIPSEFGFLEPQGSALPPSSKMGGLVDFAATEMMSLPHLPQTSNGFMGFQNSEEGSGKSLFLNRSKVLRPLDSLPPSGTQPTLFQKRAALRKNMGKGEIGEGSDKKRKFSGGDEIDDLSFDGSGLNYDSDDLTETNGKNFGNASNGNSTVTDQKGKKKGMPAKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIEYLKELLQRIKDLHNELESTPAGSSLTPASSYHPLTPTASSLPSRIKEELCPSSLPSPNGQPARVEVRLREGRAVNIHMFCARKPGLLLSTMSALDSLGLDVQQAVISCFNGFAMDIFKAEQCNEDQDVHPEQIKAVLLDSAGFNGMI 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g03372 508 FunFam BHLH transcription factor 313 381 - -
Vifa2g03372 508 Pfam Helix-loop-helix DNA-binding domain 324 366 IPR011598 GO:0046983
Vifa2g03372 508 MobiDBLite consensus disorder prediction 379 400 - -
Vifa2g03372 508 Coils Coil 356 380 - -
Vifa2g03372 508 MobiDBLite consensus disorder prediction 287 312 - -
Vifa2g03372 508 MobiDBLite consensus disorder prediction 287 322 - -
Vifa2g03372 508 CDD bHLH_AtAMS_like 320 385 - -
Vifa2g03372 508 Gene3D - 309 381 IPR036638 GO:0046983
Vifa2g03372 508 SMART finulus 323 372 IPR011598 GO:0046983
Vifa2g03372 508 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 206 505 - -
Vifa2g03372 508 MobiDBLite consensus disorder prediction 252 271 - -
Vifa2g03372 508 MobiDBLite consensus disorder prediction 38 70 - -
Vifa2g03372 508 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 317 366 IPR011598 GO:0046983
Vifa2g03372 508 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 320 385 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g03372 Vifa-Chr2 971310494 971312744 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g03372 84 481 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G26744 53.191 6.16e-120 359
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vifa2g03372 HLH 1.9e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g03372 - - cave:132174704 539.65
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g02931 4 939451021 939451725 Vifa2g03372 2 971310494 971312744 ECH
Vifa2g03372 2 971310494 971312744 Vifa2g03372 2 971310494 971312744 ECH
Vifa2g03372 2 971310494 971312744 Vifa2g03372 2 971310494 971312744 PCT