Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g03370 ATGAATTTTGCAAAACTCAACGACTCGCCTATGTTTCGTCAACAGCTTCAGGGTTTGGAAGAAAATGCAGAATCGTTACGCTCAAGATGTTGGAAGTTTTTCAAAGGATGTCGAAAGTACACGGAAGGGCTTGGAGAGGCATATGATGGAGACATCGCATTTGCAGCTGCACTTGAAAGTTTTGGAGGAGGGCAGAGTGATCCTCTATTTGTAACTTTGGGAGGACCTGTAATGACCAAATTCGCTATTGCTTTGAGAGAAATCAGTACACACAAGGAACTTCTTCGGTCACAGGTGGAGCATATGCTGAATGACCGGTTACTGAACATCTTAAATTTCGAAATCCTTGATGTCAAGGAAGCTCGAAGGCGTTTTGATAAAGCTTCCCTTGTATATGATCAGGCTCGTGAGAAGTTTATGTCATTGAGAAAAAGCACCAAGTTTGATGTTGCCGCTGTCATAGAAGAGGAATTGCACAATGCAAGAACAATTTTTGAGGAAGCTCGTTTCAATCTGGTTGGTGCTCTTCATAATATCGAGGCCAAGAAGAGATTTGAGTTTTTGGAGGCTGTCACTGGAGTTATGGACGCTCATCTTCGATACTTTCAACAGGGATATCAGCAGTTGCAGGAGCTGGAGCCTTTCATTATTGAGGTTTTGGCTTATGCACAAAAAGCAAGAGAAAGTTACAACGAAGAGCAGATTTCTCTTTGTGAAAGAATGGTAGAGTACAAAAAACTAAGTTATCAAGAAAGTAGGTTCTCCTTAAACGGCCCTTATGGTTCTCCGAGTGGAGAAGGTGCGCATATGCATCCTTTTTCTAGGATATCAAACAGTGTTGTAGAGGTAGTAGCTGAATCAGCTGCAAGTGGAAAGGTTCTAGTCATTCGACAAGGGTATCTTTCAAAACGTTCCTCCAATTTGAGGGGTGACTGGAAGAGAAGGTTTTTTGTTCTTGATACTCGTGGAATGCTTTACTACTACCGTAAATCATTACAAGGAAATAGTACCAATCAGCAATCTTCACAGAGGAATTGTGCCAGTGAAAACAGTGCTGGTATTCTGAGTAAGTTGCTTTCTTCACCGTATCATGGAGTTATTCCTGATGAAAAATCGGTAGCTCGCCACACGGTGAACCTGCTGACATCAACAATCAAGATTGATGCTGAGCAATCAGATTTGAGATTCTGCTTCAGGATTATTTCACCCTCAAAAATGTATACTTTACAGGCAGAAAATGCCCTCGACCAGATGGATTGGATGGAAAAGATAAATGGTGTCATTGCCTCATTGTTGTCTGTACAGACACTAGGTGGAAAGGCTATCTCAACTGAGTCAGAAAGCGGTGAAACTGACTCTTCCAGTAACACTGACTCATTTCAATGTTTACAAGATTACGATCAATTAGTGAGTGGGGAACTTGCATCCAAGAACTCCGCCACTAATAAATCACCTGAAGATGTACAGAAGAATAGGCCGAGTATAAAAGTTGAACAGCCAATTGATATTCTAAGAAAGGTTAGCGGTAATGACAAATGTGCTGATTGTGGTAAACCTGAACCAGACTGGGCATCCTTAAACCTTGGCATCCTTGTATGCATTGAATGCTCTGGTGTTCACCGTAATCTTGGTGTACATAAATCAAAAGTAAGATCACTGAAACTTGATGTCAAAGTGTGGGATTCGTCCGTCTTAACTATGTTTCAGTCACTGGGAAATCTCTTTGCGAACTCGGTTTGGGAGGAGCTTTTGCTCACAACAAGTAATCCACAAACTGACGACACTCCATATGGGTGTTCACCCAGAGCTGCTAAAAACAAGTTATGTCATATAAAAAAACCAGAACATGATGAACCTATTTCACTTAAGGAGAAATTCATTCATGCAAAGTATTCTGAGAAAGTCTTTGTTCGACGAAGGCCAAAAAGCCCCCATCTTCTTTCAGGGGCACAACAAGTTCTGGAATGCATCTATGCCAACGACAAGAAAGCAGTGTACCGGCATATTGTCAAATCGGACGTGGACATCAATTCGGCCAGTGGAGAAGCATTATCCAGCCTTTTTTCTAATATGTCTTCATCAATTGATTCGAACACGACTTCTACAAATAAAGTTCAGCTAATGGAGGACATACAAGAGGGTTCTAGTGTGCTTCATTTGGCCTGTCTGACAAGTGATGCTGGAATGGTAGAGCTGCTACTACAGTATGGAGCAGATATAAATGCTATTGATTCAAGAGGTAGGACACCGCTGCATTACTGCATTTTGCGAGGGAAGAACGCAGCAGCAAAATTGCTTATTACAAGGGGTGCCAATCCACTTGCCATAGATAAAGAAGGCAACACTCCTCTTAAGCTTGCACCAGAATCCGGCGCTATTGGAAAAGACATCCTTACACTCTTAACAACGAGCAGATAA 2418 0.4181 MNFAKLNDSPMFRQQLQGLEENAESLRSRCWKFFKGCRKYTEGLGEAYDGDIAFAAALESFGGGQSDPLFVTLGGPVMTKFAIALREISTHKELLRSQVEHMLNDRLLNILNFEILDVKEARRRFDKASLVYDQAREKFMSLRKSTKFDVAAVIEEELHNARTIFEEARFNLVGALHNIEAKKRFEFLEAVTGVMDAHLRYFQQGYQQLQELEPFIIEVLAYAQKARESYNEEQISLCERMVEYKKLSYQESRFSLNGPYGSPSGEGAHMHPFSRISNSVVEVVAESAASGKVLVIRQGYLSKRSSNLRGDWKRRFFVLDTRGMLYYYRKSLQGNSTNQQSSQRNCASENSAGILSKLLSSPYHGVIPDEKSVARHTVNLLTSTIKIDAEQSDLRFCFRIISPSKMYTLQAENALDQMDWMEKINGVIASLLSVQTLGGKAISTESESGETDSSSNTDSFQCLQDYDQLVSGELASKNSATNKSPEDVQKNRPSIKVEQPIDILRKVSGNDKCADCGKPEPDWASLNLGILVCIECSGVHRNLGVHKSKVRSLKLDVKVWDSSVLTMFQSLGNLFANSVWEELLLTTSNPQTDDTPYGCSPRAAKNKLCHIKKPEHDEPISLKEKFIHAKYSEKVFVRRRPKSPHLLSGAQQVLECIYANDKKAVYRHIVKSDVDINSASGEALSSLFSNMSSSIDSNTTSTNKVQLMEDIQEGSSVLHLACLTSDAGMVELLLQYGADINAIDSRGRTPLHYCILRGKNAAAKLLITRGANPLAIDKEGNTPLKLAPESGAIGKDILTLLTTSR 805
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g03370 805 Pfam Ankyrin repeats (3 copies) 718 801 IPR002110 GO:0005515
Vifa2g03370 805 ProSiteProfiles Ankyrin repeat region circular profile. 746 772 - -
Vifa2g03370 805 ProSiteProfiles ARF GTPase-activating proteins domain profile. 498 644 IPR001164 GO:0005096
Vifa2g03370 805 CDD BAR_SFC_plant 15 215 IPR035670 -
Vifa2g03370 805 ProSiteProfiles PH domain profile. 294 429 IPR001849 -
Vifa2g03370 805 SMART PH_update 295 431 IPR001849 -
Vifa2g03370 805 SMART arf_gap_3 498 644 IPR001164 GO:0005096
Vifa2g03370 805 SMART 5bar 2 218 IPR004148 GO:0005515|GO:0005737
Vifa2g03370 805 Gene3D - 289 438 IPR011993 -
Vifa2g03370 805 Pfam PH domain 295 428 IPR001849 -
Vifa2g03370 805 Pfam BAR domain of APPL family 6 233 IPR004148 GO:0005515|GO:0005737
Vifa2g03370 805 SUPERFAMILY BAR/IMD domain-like 6 317 IPR027267 -
Vifa2g03370 805 SUPERFAMILY PH domain-like 295 443 - -
Vifa2g03370 805 SUPERFAMILY ArfGap/RecO-like zinc finger 498 639 IPR037278 -
Vifa2g03370 805 ProSiteProfiles Ankyrin repeat region circular profile. 713 744 - -
Vifa2g03370 805 ProSiteProfiles Ankyrin repeat profile. 713 745 IPR002110 GO:0005515
Vifa2g03370 805 CDD PH_ACAP 297 433 - -
Vifa2g03370 805 Pfam Putative GTPase activating protein for Arf 501 639 IPR001164 GO:0005096
Vifa2g03370 805 SUPERFAMILY Ankyrin repeat 711 792 IPR036770 -
Vifa2g03370 805 Gene3D - 668 804 IPR036770 -
Vifa2g03370 805 Gene3D Arf GTPase activating protein 478 644 IPR038508 -
Vifa2g03370 805 ProSiteProfiles Ankyrin repeat profile. 746 778 IPR002110 GO:0005515
Vifa2g03370 805 CDD ArfGap 501 631 - -
Vifa2g03370 805 SMART ANK_2a 713 742 IPR002110 GO:0005515
Vifa2g03370 805 SMART ANK_2a 746 775 IPR002110 GO:0005515
Vifa2g03370 805 Gene3D Arfaptin homology (AH) domain/BAR domain 4 250 IPR027267 -
Vifa2g03370 805 FunFam ADP-ribosylation factor GTPase-activating protein AGD1 480 645 - -
Vifa2g03370 805 Coils Coil 118 138 - -
Vifa2g03370 805 PANTHER CENTAURIN/ARF 3 803 IPR045258 GO:0005096
Vifa2g03370 805 PRINTS HIV Rev interacting protein signature 552 573 IPR001164 GO:0005096
Vifa2g03370 805 PRINTS HIV Rev interacting protein signature 510 529 IPR001164 GO:0005096
Vifa2g03370 805 PRINTS HIV Rev interacting protein signature 529 546 IPR001164 GO:0005096
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g03370 Vifa-Chr2 970855146 970860737 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g03370 501 637 C2H2 Transcription Factor Family AT3G07940 38.406 3.95e-19 86.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g03370 K12489 - gmx:100797073 1114.75
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g03370 2 970855146 970860737 Vifa2g03370 2 970855146 970860737 ECH
Vifa2g03370 2 970855146 970860737 Vifa2g03370 2 970855146 970860737 PCT