Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g03368 ATGGATAGAAGGAGAGAATCATGGGAAGAAGATGGAAAACAAGATGAGAATTTGTTTCCAGTGTTTTCTGAAAGGTCACAGCAAGATATGTCAGCCATAGTTTCTGCACTGACACAAGTCATGGGAGGCAACAACAACAATGAACTTCAAGAAGCTTCCTCAATCCATATTAATGAACAATCTCAACCACCAGAACAAGATCAAGGGAGTGAAAGAAAAAGGCACTATAGAGGAGTGAGGCAGAGGCCATGGGGAAAATGGGCTGCAGAGATTCGCGATCCGAAGAAGGCGGCAAGAGTGTGGCTTGGAACCTTTGAAACTGCTGAGGCTGCAGCTGTTGCTTATGATGAAGCTGCACTTAGATTCAAAGGAAGCAAAGCTAAGCTCAATTTTCCTGAAAGAGTTCAAAGTTCGGCAGAATTTGGATTTAACCAAGAGTTTCATCATTTTATGTCATCCACAAATAACCAGCAACAGTCTAACTCAGTTCCTCTTCAACAATTTACTCAAGAAGCATATTCAAATCCTTATCAATATGCTGCTGCACAAGCACAACTTCAAGGCGGTGGTGGTGGTGGTAGTGGTAACTTCAATCAGGATATACTTCGTTATTATGGGAGAGACATGTTTGTTTCTAATCCTCAGAACTTATCAACTTCGTCTTCGTCTTCGTCCTCATCTTCTGGATTATCTCAGCAGCAACAAGAGTTTCTGAGATTGTCTATGCAATTTGGAGGTTCTTCTTCTGCTTCTCAGCCTCCAAGGAATTGGAGGGATGACATGGATGGGAGACACTAA 798 0.4223 MDRRRESWEEDGKQDENLFPVFSERSQQDMSAIVSALTQVMGGNNNNELQEASSIHINEQSQPPEQDQGSERKRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFETAEAAAVAYDEAALRFKGSKAKLNFPERVQSSAEFGFNQEFHHFMSSTNNQQQSNSVPLQQFTQEAYSNPYQYAAAQAQLQGGGGGGSGNFNQDILRYYGRDMFVSNPQNLSTSSSSSSSSSGLSQQQQEFLRLSMQFGGSSSASQPPRNWRDDMDGRH 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g03368 265 ProSiteProfiles AP2/ERF domain profile. 75 132 IPR001471 GO:0003700|GO:0006355
Vifa2g03368 265 MobiDBLite consensus disorder prediction 1 20 - -
Vifa2g03368 265 PANTHER DNA-BINDING DOMAIN 44 220 IPR044808 GO:0003700|GO:0009873
Vifa2g03368 265 FunFam Ethylene-responsive transcription factor 2 74 133 - -
Vifa2g03368 265 MobiDBLite consensus disorder prediction 44 79 - -
Vifa2g03368 265 MobiDBLite consensus disorder prediction 215 265 - -
Vifa2g03368 265 MobiDBLite consensus disorder prediction 215 255 - -
Vifa2g03368 265 Pfam AP2 domain 75 124 IPR001471 GO:0003700|GO:0006355
Vifa2g03368 265 Gene3D AP2/ERF domain 74 134 IPR036955 GO:0003700|GO:0006355
Vifa2g03368 265 SUPERFAMILY DNA-binding domain 75 133 IPR016177 GO:0003677
Vifa2g03368 265 SMART rav1_2 75 138 IPR001471 GO:0003700|GO:0006355
Vifa2g03368 265 MobiDBLite consensus disorder prediction 1 18 - -
Vifa2g03368 265 MobiDBLite consensus disorder prediction 44 65 - -
Vifa2g03368 265 CDD AP2 75 133 IPR001471 GO:0003700|GO:0006355
Vifa2g03368 265 PRINTS Ethylene responsive element binding protein signature 76 87 IPR001471 GO:0003700|GO:0006355
Vifa2g03368 265 PRINTS Ethylene responsive element binding protein signature 98 114 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g03368 Vifa-Chr2 969092506 969093472 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g03368 17 136 AP2-EREBP Transcription Factor Family AT5G61890 69.466 1.21e-57 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Vifa2g03368 AP2 4.2e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g03368 - - gmx:100787091 244.202