Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g03362 ATGCCTTTTGAAATAATGAATCAGAGGGGTGTTACTGCTTCATCTCACCTTTATGATGATGTTTCCTATGCTTCTGAGAAGAATATTGGATTACGGAAGCCAAAATCCATTCATGATGATTATGCACAAGTTTTGAACACGGCAAGTCGCTATCAGTTTGATTTTGGATGTGGAAGAGTGAAAATTGCAGCTTCACCTGGAAGCATTTTGCATACTTCATCAACCCTTGAAAGAAACGCAAAAACAGGCTTGCCAATGTCACAGACTAGTCTATCTGGAGAAATTTCAGAAAACCTACACTTTGGTGGACAAGCTGGCATTGTAGATGCGCTGAAGGATTCAAAAGAATCGCTGAATTATCATCCGAGATCATGGTCTGATGTACATAAGCAGCCAGCATCTAGCTCGTATGGTTTAATTGGCAACAAGATTGTCACCAATGCAGGTTCACGTGAAAGCAGTCTATTCTCAAGCTCACTCTCCGATATGTTTAGCCAAAAGTTGAGGTTGTTGGGAAATGGTGTTCTGTCTGATCAGAACAAAACTGCTGGTCTTCTTCCTGAGGAAGAACCATACAAATCTCTTGAAGAAGTCGAGGCTGACACCATAGGGGATCTCCTTCCTGATGAAGATGATCTGTTTTCCGGTGTCAATGATGAATTAGGAAGCAGTGTTCATGCCAGAGCAAATGATGATTTTGAAGATTTGTTCAGCAGTGGTGGAGGCATGGAGTTGGAAGGAGATGAACTCCTAGTTTCAGGAAAAAGAATCAGTGGCTTGGATGGAGATCCTGCTTACTTTGGGGGTTCTAAAGGCAAAAGTCCTTTTGGTGAACAATCTTCTAGAACACTTTTTGTTAGAAACATTACTAGCAATGTAGAAGACTCAGAGCTAAAGGCTCTCTTTGAGCAATATGGAGATATCCGAACCATTTATACTGCCTCCAAGCATCGTGGCTTTGTTATGGTTTCTTATTATGACCTAAGGGCAGCACAAAATGCAATGAAAGCACTTCAAAATAATAGGTCATTGAATTCCAGGAAACTGGATATACATTATTCAATTCCAAAGGGAAATGCTTCAGAGAAGGATATTTGCCATGGCACACTGATGATATCTGGTCTTGATCCATCTGTTTTAAAAGATGAACTAAAACATATTTTTGGATTTTATGGAGAAATCAAAGAAATCTATGAATACTCAGAAATGAATCATATCAAATATATTGAATTTTATGATGTTCGAGGCGCAGAAGCTTCTCTCCGTTCATTGAATGGGATCTGCATTGCTGGGAAGCATATCAAGCTTGAACCTGGCCATCCTAAGATTGCAACATGTATGATGCAGCCGTCTCAAAAGGGACCAGATGAACCTGATCTTGGTCATAATCTCAATGACATCCTATTCTTAAGACAAAAGGGACTGTCTTCTGGAGTTATTCCATCTGGTGGAGGCTTGGAAAATGGATATAATCAAAGATTCCATTCTCCATCACAGCTGCCTTTGAATGCTTTCCTTGATGACACAATTTTTCACAGTATTTCCAACACCACAAGAGGGCCATCTGCTGTTCCAAGATTCCACCCTCATTCTTTGCCTGAGTATTTTGATGGCCTGGCTAATGGTAGTCCTTACAATTTGTCAAACACCATTAAAATGGCTGCCAATATTGGAACTGGATCCACAGAAGCATCTGATGGCAGGCACATTCAGGGAATGAGCTCAACTGGGAACTCAGCAGATTTTAATGCAGGAGGAAATGGGAGCCTTCCCCATCACCAGCTTTATCATATGTGGAATGGCTCAAACTTGCGTCAGCAATCTCCATCAAATGCAGTGGTTTGGCAGAAGACACCATCTTTTGTTAATGGTGCTTGTGCTCCAGGTCTTCCACAGATGCCCAGTTTTGCCAGGTCACCGGCTCATGTTCTGAGAGCATCACATATAGACCACCATGTTGGATCAGCACCAGTTGTTACAGGATCACCCTGGGAAAGACAACATTCTTACTTGGGAGAGTCTCCCGATACTCCTGGTTTTAGATTGGGTTCTCTAGGAAATGGAGGTTTTCATGGTAGCTGGCAGTTGCATCCTCCAGATCTTTCTAGCAACATGTTTTCTCATGTTCGTGGGAATGTTAACGATTTGACATCCAGTGTTGGGCAGGGTTCTCCTAAGCAGTTGTCGCATACAACCCGAACAACGCTTATGATAAAAAATATTCCCAACAAGTATACTTCAAAGATGCTTCTTACAGCCATAGATGAGAGTTGTCGGGGAGCTTATGATTTTCTGTATTTGCCAATTGATTTCAAGAACAAGTGTAACGTTGGCTATGCATTCATCAATATGATTGATCCTGGTCAAATCGTTCCATTCCACCAGGCTTTTAATGGGAAAAAATGGGAGAAGTTTAACAGTGAAAAGGTAGCCGTGCTTGCATATGCTCGGATTCAAGGAAAATCTGCTCTTATTGCTCATTTCCAGAATTCAAGCTTGATGAATGAAGATAAACGTTGTCGTCCTATTCTATTCCATACAGATGGTCCAAATGCTGGTGATCCGGAGCCTTTTCCCTTGGGTGCCAATATTAGAGTAAGGCCCGGAAAATTACGTAATAGTATCAACGAGGAAAACCGTATTCAAGGGAATTCTTCATCTTTGGCAAGTGCTGAGGAGTTTGCTAGTGGAATAGATTCTTCACCGAGTTCTTCAAGAGACACTGACTGA 2730 0.4154 MPFEIMNQRGVTASSHLYDDVSYASEKNIGLRKPKSIHDDYAQVLNTASRYQFDFGCGRVKIAASPGSILHTSSTLERNAKTGLPMSQTSLSGEISENLHFGGQAGIVDALKDSKESLNYHPRSWSDVHKQPASSSYGLIGNKIVTNAGSRESSLFSSSLSDMFSQKLRLLGNGVLSDQNKTAGLLPEEEPYKSLEEVEADTIGDLLPDEDDLFSGVNDELGSSVHARANDDFEDLFSSGGGMELEGDELLVSGKRISGLDGDPAYFGGSKGKSPFGEQSSRTLFVRNITSNVEDSELKALFEQYGDIRTIYTASKHRGFVMVSYYDLRAAQNAMKALQNNRSLNSRKLDIHYSIPKGNASEKDICHGTLMISGLDPSVLKDELKHIFGFYGEIKEIYEYSEMNHIKYIEFYDVRGAEASLRSLNGICIAGKHIKLEPGHPKIATCMMQPSQKGPDEPDLGHNLNDILFLRQKGLSSGVIPSGGGLENGYNQRFHSPSQLPLNAFLDDTIFHSISNTTRGPSAVPRFHPHSLPEYFDGLANGSPYNLSNTIKMAANIGTGSTEASDGRHIQGMSSTGNSADFNAGGNGSLPHHQLYHMWNGSNLRQQSPSNAVVWQKTPSFVNGACAPGLPQMPSFARSPAHVLRASHIDHHVGSAPVVTGSPWERQHSYLGESPDTPGFRLGSLGNGGFHGSWQLHPPDLSSNMFSHVRGNVNDLTSSVGQGSPKQLSHTTRTTLMIKNIPNKYTSKMLLTAIDESCRGAYDFLYLPIDFKNKCNVGYAFINMIDPGQIVPFHQAFNGKKWEKFNSEKVAVLAYARIQGKSALIAHFQNSSLMNEDKRCRPILFHTDGPNAGDPEPFPLGANIRVRPGKLRNSINEENRIQGNSSSLASAEEFASGIDSSPSSSRDTD 909
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g03362 909 MobiDBLite consensus disorder prediction 875 909 - -
Vifa2g03362 909 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 284 349 IPR000504 GO:0003723
Vifa2g03362 909 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 370 435 IPR000504 GO:0003723
Vifa2g03362 909 PANTHER RNA RECOGNITION MOTIF-CONTAINING 133 904 - -
Vifa2g03362 909 Pfam RNA recognition motif 2 733 829 IPR007201 -
Vifa2g03362 909 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 368 441 IPR000504 GO:0003723
Vifa2g03362 909 CDD RRM3_MEI2_like 736 821 IPR034454 -
Vifa2g03362 909 Gene3D - 367 458 IPR012677 -
Vifa2g03362 909 SMART rrm1_1 283 352 IPR000504 GO:0003723
Vifa2g03362 909 SMART rrm1_1 735 813 IPR000504 GO:0003723
Vifa2g03362 909 SMART rrm1_1 369 437 IPR000504 GO:0003723
Vifa2g03362 909 Gene3D - 270 366 IPR012677 -
Vifa2g03362 909 SUPERFAMILY RNA-binding domain, RBD 735 820 IPR035979 GO:0003676
Vifa2g03362 909 CDD RRM1_MEI2_like 281 357 IPR034453 -
Vifa2g03362 909 FunFam Protein MEI2-like 1 367 461 - -
Vifa2g03362 909 SUPERFAMILY RNA-binding domain, RBD 279 440 IPR035979 GO:0003676
Vifa2g03362 909 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 282 356 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g03362 Vifa-Chr2 967737080 967742477 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g03362 277 442 Eukaryotic Initiation Factors Gene Family AT3G16380 25.134 7.56e-09 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g03362 - - gmx:100797616 1321.61