Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g03361 ATGCCTTTTGAAATAATGAATCAGAGGGGTGTTACTGCTTCATCTCACCTTTATGATGATGTTTCCTATGCTTCTGAGAAGAATATTGGATTACGGAAGCCAAAATCCATTCATGATGATTATGCACAAGCTTCACCTGGAAGCATTTTGCATACTTCATCAACCCTTGAAAGAAACGCAAAAACAGGCTTGCCAATGTCACAGACTAGTCTATCTGGAGAAATTTCAGAAAACCTACACTTTGGTGGACAAGCTGGCATTGTAGATGCGCTGAAGGATTCAAAAGAATCGCTGAATTATCATCCGAGATCATGGTCTGATGTACATAAGCAGCCAGCATCTAGCTCGTATGGTTTAATTGGCAACAAGATTGTCACCAATGCAGGTTCACGTGAAAGCAGTCTATTCTCAAGCTCACTCTCCGATATGTTTAGCCAAAAGTTGAGGTTGTTGGGAAATGGTGTTCTGTCTGATCAGAACAAAACTGCTGGTCTTCTTCCTGAGGAAGAACCATACAAATCTCTTGAAGAAGTCGAGGCTGACACCATAGGGGATCTCCTTCCTGATGAAGATGATCTGTTTTCCGGTGTCAATGATGAATTAGGAAGCAGTGTTCATGCCAGAGCAAATGATGATTTTGAAGATTTGTTCAGCAGTGGTGGAGGCATGGAGTTGGAAGGAGATGAACTCCTAGTTTCAGGAAAAAGAATCAGTGGCTTGGATGGAGATCCTGCTTACTTTGGGGGTTCTAAAGGCAAAAGTCCTTTTGGTGAACAATCTTCTAGAACACTTTTTGTTAGAAACATTACTAGCAATGTAGAAGACTCAGAGCTAAAGGCTCTCTTTGAGCAATATGGAGATATCCGAACCATTTATACTGCCTCCAAGCATCGTGGCTTTGTTATGGTTTCTTATTATGACCTAAGGGCAGCACAAAATGCAATGAAAGCACTTCAAAATAATAGGTCATTGAATTCCAGGAAACTGGATATACATTATTCAATTCCAAAGGGAAATGCTTCAGAGAAGGATATTTGCCATGGCACACTGATGATATCTGGTCTTGATCCATCTGTTTTAAAAGATGAACTAAAACATATTTTTGGATTTTATGGAGAAATCAAAGAAATCTATGAATACTCAGAAATGAATCATATCAAATATATTGAATTTTATGATGTTCGAGGCGCAGAAGCTTCTCTCCGTTCATTGAATGGGATCTGCATTGCTGGGAAGCATATCAAGCTTGAACCTGGCCATCCTAAGATTGCAACATGTATGATGCAGCCGTCTCAAAAGGGACCAGATGAACCTGATCTTGGTCATAATCTCAATGACATCCTATTCTTAAGACAAAAGGGACTGTCTTCTGGAGTTATTCCATCTGGTGGAGGCTTGGAAAATGGATATAATCAAAGATTCCATTCTCCATCACAGCTGCCTTTGAATGCTTTCCTTGATGACACAATTTTTCACAGTATTTCCAACACCACAAGAGGGCCATCTGCTGTTCCAAGATTCCACCCTCATTCTTTGCCTGAGTATTTTGATGGCCTGGCTAATGGTAGTCCTTACAATTTGTCAAACACCATTAAAATGGCTGCCAATATTGGAACTGGATCCACAGAAGCATCTGATGGCAGGCACATTCAGGGAATGAGCTCAACTGGGAACTCAGCAGATTTTAATGCAGGAGGAAATGGGAGCCTTCCCCATCACCAGCTTTATCATATGTGGAATGGCTCAAACTTGCGTCAGCAATCTCCATCAAATGCAGTGGTTTGGCAGAAGACACCATCTTTTGTTAATGGTGCTTGTGCTCCAGGTCTTCCACAGATGCCCAGTTTTGCCAGGTCACCGGCTCATGTTCTGAGAGCATCACATATAGACCACCATGTTGGATCAGCACCAGTTGTTACAGGATCACCCTGGGAAAGACAACATTCTTACTTGGGAGAGTCTCCCGATACTCCTGGTTTTAGATTGGGTTCTCTAGGAAATGGAGGTTTTCATGGTAGCTGGCAGTTGCATCCTCCAGATCTTTCTAGCAACATGTTTTCTCATGTTCGTGGGAATGTTAACGATTTGACATCCAGTGTTGGGCAGGGTTCTCCTAAGCAGTTGTCGCATACAACCCGAACAACGCTTATGATAAAAAATATTCCCAACAAGTATACTTCAAAGATGCTTCTTACAGCCATAGATGAGAGTTGTCGGGGAGCTTATGATTTTCTGTATTTGCCAATTGATTTCAAGAACAAGTGTAACGTTGGCTATGCATTCATCAATATGATTGATCCTGGTCAAATCGTTCCATTCCACCAGGCTTTTAATGGGAAAAAATGGGAGAAGTTTAACAGTGAAAAGGTAGCCGTGCTTGCATATGCTCGGATTCAAGGAAAATCTGCTCTTATTGCTCATTTCCAGAATTCAAGCTTGATGAATGAAGATAAACGTTGTCGTCCTATTCTATTCCATACAGATGGTCCAAATGCTGGTGATCCGGAGCCTTTTCCCTTGGGTGCCAATATTAGAGTAAGGCCCGGAAAATTACGTAATAGTATCAACGAGGAAAACCGTATTCAAGGGAATTCTTCATCTTTGGCAAGTGCTGAGGAGTTTGCTAGTGGAATAGATTCTTCACCGAGTTCTTCAAGAGACACTGACTGA 2670 0.4157 MPFEIMNQRGVTASSHLYDDVSYASEKNIGLRKPKSIHDDYAQASPGSILHTSSTLERNAKTGLPMSQTSLSGEISENLHFGGQAGIVDALKDSKESLNYHPRSWSDVHKQPASSSYGLIGNKIVTNAGSRESSLFSSSLSDMFSQKLRLLGNGVLSDQNKTAGLLPEEEPYKSLEEVEADTIGDLLPDEDDLFSGVNDELGSSVHARANDDFEDLFSSGGGMELEGDELLVSGKRISGLDGDPAYFGGSKGKSPFGEQSSRTLFVRNITSNVEDSELKALFEQYGDIRTIYTASKHRGFVMVSYYDLRAAQNAMKALQNNRSLNSRKLDIHYSIPKGNASEKDICHGTLMISGLDPSVLKDELKHIFGFYGEIKEIYEYSEMNHIKYIEFYDVRGAEASLRSLNGICIAGKHIKLEPGHPKIATCMMQPSQKGPDEPDLGHNLNDILFLRQKGLSSGVIPSGGGLENGYNQRFHSPSQLPLNAFLDDTIFHSISNTTRGPSAVPRFHPHSLPEYFDGLANGSPYNLSNTIKMAANIGTGSTEASDGRHIQGMSSTGNSADFNAGGNGSLPHHQLYHMWNGSNLRQQSPSNAVVWQKTPSFVNGACAPGLPQMPSFARSPAHVLRASHIDHHVGSAPVVTGSPWERQHSYLGESPDTPGFRLGSLGNGGFHGSWQLHPPDLSSNMFSHVRGNVNDLTSSVGQGSPKQLSHTTRTTLMIKNIPNKYTSKMLLTAIDESCRGAYDFLYLPIDFKNKCNVGYAFINMIDPGQIVPFHQAFNGKKWEKFNSEKVAVLAYARIQGKSALIAHFQNSSLMNEDKRCRPILFHTDGPNAGDPEPFPLGANIRVRPGKLRNSINEENRIQGNSSSLASAEEFASGIDSSPSSSRDTD 889
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g03361 889 Gene3D - 250 346 IPR012677 -
Vifa2g03361 889 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 262 336 IPR000504 GO:0003723
Vifa2g03361 889 Gene3D - 347 438 IPR012677 -
Vifa2g03361 889 MobiDBLite consensus disorder prediction 855 889 - -
Vifa2g03361 889 Pfam RNA recognition motif 2 713 809 IPR007201 -
Vifa2g03361 889 CDD RRM3_MEI2_like 716 801 IPR034454 -
Vifa2g03361 889 SUPERFAMILY RNA-binding domain, RBD 259 420 IPR035979 GO:0003676
Vifa2g03361 889 SUPERFAMILY RNA-binding domain, RBD 715 800 IPR035979 GO:0003676
Vifa2g03361 889 FunFam Protein MEI2-like 1 347 441 - -
Vifa2g03361 889 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 348 421 IPR000504 GO:0003723
Vifa2g03361 889 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 264 329 IPR000504 GO:0003723
Vifa2g03361 889 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 350 415 IPR000504 GO:0003723
Vifa2g03361 889 CDD RRM1_MEI2_like 261 337 IPR034453 -
Vifa2g03361 889 SMART rrm1_1 263 332 IPR000504 GO:0003723
Vifa2g03361 889 SMART rrm1_1 349 417 IPR000504 GO:0003723
Vifa2g03361 889 SMART rrm1_1 715 793 IPR000504 GO:0003723
Vifa2g03361 889 PANTHER RNA RECOGNITION MOTIF-CONTAINING 111 884 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g03361 Vifa-Chr2 967737080 967742477 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g03361 257 422 Eukaryotic Initiation Factors Gene Family AT3G16380 25.134 6.34e-09 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g03361 - - gmx:100797616 1320.06