Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g03358 ATGGATCCAGACGCATTCACCGCCAGCCTATTCAAGTGGGATCCACGCACCGTCCTCCCCACTGCTCCATCTCCCCGTCCTCAGCTTCTTGACTACGCGGTTCCTCCTACAACCACTCCGATGACTTATCATCCAGCGAGGTTACCAAGAGAGCTAGGAGGGTTGGAGGAGCTTTTCCAAGCGTACGGTATCAGATACTACACGGCGGCGAAGATAGCGGAGCTTGGTTTCACGGTGAGCACGCTGGTGGACATGAAGGACGATGAGCTTGACGACATGATGAACAGCCTCTCCCAGATTTTTCGTTGGGATCTTCTTGTTGGTGAACGTTACGGTATCAAAGCCGCCATTAGAGCTGAAAGAAGACGCCTCGATGAGGAAGAAATTAAACGCCGCGGTCTTCTCTCAGGCGATACCACAAACGCTCTCGATGCTCTCTCTCAAGAAGGTTTGTCGGAGGAGCCAGTGGTGCAACGTGAAAAGGAAGCGGTGGGGAGTGGAGGAGGGAGCACGTGGGAGGTAGCTGTGGTGGAGGAGAGGAGAAAGAGGCAGCAGATAAGGAGGCGGAGGATGAAGATGAAGGGGAATGATCATGGTGAGAATGAAGAAGGAGAAGAAGACGAAGAGGATAACATCAGTGGTGGTGGTGAGAGGCAGAGAGAACATCCGTTCATTGTGACGGAGCCTGGGGAAGTGGCACGTGGCAAAAAGAACGGTCTGGATTATCTCTTTCATCTCTATGAACAATGCCGTGAGTTTCTCATTCAAGTTCAAGCCATCGCTAAAGAGCGCGGTGAGAAATGCCCCACCAAGGTGACAAATCAAGTGTTTAGGTATGCAAAGAAAGCTGGAGCGAGTTACATAAACAAGCCGAAAATGAGACACTATGTTCACTGTTACGCGTTGCATTGTTTAGATGAGGAAGTGTCAAATGAACTGAGAAGAGGATTTAAGGAAAGAGGTGAGAACGTTGGCGCGTGGAGGCAAGCTTGTTATAAGCCACTTGTGGCTATTGCTGCACGTCAAGGATGGGATATTGATACAATATTCAACGCGCATCCACGGCTATCGATATGGTACGTGCCAACCAAGCTTCGTCAGCTTTGTCATGCGGAGAGGAACGGTGCTGCTGCTTCAAGCTCCGTCTCGGTTGGAACTACTCACCTTCCTTTCTGA 1176 0.506 MDPDAFTASLFKWDPRTVLPTAPSPRPQLLDYAVPPTTTPMTYHPARLPRELGGLEELFQAYGIRYYTAAKIAELGFTVSTLVDMKDDELDDMMNSLSQIFRWDLLVGERYGIKAAIRAERRRLDEEEIKRRGLLSGDTTNALDALSQEGLSEEPVVQREKEAVGSGGGSTWEVAVVEERRKRQQIRRRRMKMKGNDHGENEEGEEDEEDNISGGGERQREHPFIVTEPGEVARGKKNGLDYLFHLYEQCREFLIQVQAIAKERGEKCPTKVTNQVFRYAKKAGASYINKPKMRHYVHCYALHCLDEEVSNELRRGFKERGENVGAWRQACYKPLVAIAARQGWDIDTIFNAHPRLSIWYVPTKLRQLCHAERNGAAASSSVSVGTTHLPF 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g03358 391 MobiDBLite consensus disorder prediction 147 169 - -
Vifa2g03358 391 MobiDBLite consensus disorder prediction 185 221 - -
Vifa2g03358 391 PANTHER PROTEIN LEAFY 1 390 IPR002910 GO:0003677|GO:0006355
Vifa2g03358 391 Pfam DNA Binding Domain (C-terminal) Leafy/Floricaula 213 377 IPR035209 GO:0003677
Vifa2g03358 391 Pfam Floricaula / Leafy protein SAM domain 51 128 IPR035079 -
Vifa2g03358 391 Gene3D Protein LEAFY 214 383 IPR038276 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g03358 1 385 Orphan Transcription Factor Family AT5G61850 64.951 3.56e-158 450
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LFY Vifa2g03358 C_LFY_FLO 1.4e-108 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g03358 - - gsj:114416001 639.032
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g03358 2 964312821 964314728 Vifa2g03358 2 964312821 964314728 ECH