Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g03357 ATGGCAGACTCTTTTCTCTTTGATGTTGCAGATTCACTCCTTGGAAAACTTGCTTCTTATGCTCATGAAGAAGCTTCAAAAGCTTGGGGTGTGTTTGGAGATCTACAAGGGATCAAAGACACTTTGGCTATTGTCAAATATATACTATTGGATGCTGAAGATAAGAAAGACCAAAACCACGGACTACAGGAATGGTTGAAGCAAATTCAAAACATCTTCTATGATGCCGAAGATGTGTTGGATGAAGTTGAGTGTCAAAACTCACGAGACCAATTTGTCCAAGCTTCTGGCAGCAAGAGGGATAGATTGAATAAGGTAGTTGCTGATAGGAATTTGTTTGGACTTGAGAGAATGGATGTCAATGCTAGTGTGGAAAGTAGAGAAATGAGTTATTCTCATGTTGATGCTTTAGATGTTATAGGAAGGGATAATGAAAAGGAAGAAATTATCGAGCTCTTGATGAAACCCCGTCCTCACGGTGGTGAGGATGGTGATAAAGGTCTGTGTGTGATTCCCATGGTGGGAATTGGTGGTTTGGGGAAGACCACACTTGCGAAATTGGTGTTCAATGATAAGAGGATGGATGGAGTTTTCCAATTGAAAATGTGGGTGTGTGTCTCTTATGATTTTGACATTAGGAAGATAATTGTTAAGATCATTAACTCGAGTTCAACACCGGTTTTAGCTCTTGCTTACCAAGAAAACATTGACCACTTTGATGATGAGCAGCTCGTGAGTCGTCTTAGACATAAGCTTTCTGATCAAAAGTTTTTACTAGTCTTAGATGATATATGGAATGTTAACCTTTCAAAATGGAATGAGTTGAAAGATTTGATAAAAGTTGGCGCAGTAGGAAGCAAAGTTTTAGTCACAACACGCAGTATGTCGATTGCTTCAATGATGGGAACCGTTCCTGTGTATACTTTAGAAGGTCTTTCTTTGGCTAGCTGTTTGTCTCTCTTTGTCAAATGGGCATTTAAAGAAGGCGAAGAAAAAAAGTATCCACGTCTATTGGAGATTGGAAAAGATATTGTGAGAAAATGCCGAGGGATTCCTTTAGCAGCGAGAACATTGGGAAGTTCATTGTTCTCAAAGTTTGATTTAGATAAGTGGGAGCTTGTAAGAGACTCGGAAATATGGAATTTAAGACAAAACAAAGATGACATTTTACCTGTGCTTAAGTTAAGCTATGATCAAATGCCGTCCCATTTGAGACATTGCTTTGCTTATTTTTCCCTTTTTCCAAAAGATTATCTCTTTTCTTGTGGTGAAATTTGTAATCTCTGGGATGTGTTTGGATTACTTCAATCACCAAATGGAAGTCAAAAGCTCGAGATTATTTCAAGAGATTATATTGATGAGTTACTTTCAAGATCATTTCTTCAGGATTTTGAAGATTTTGGCCACACATGTGTTTTCAAAGTACATGATTTGGTGCATGATCTTGCGGTGTATGTTGCAAAAGAGGGGTTCGTAGTGTTAAACTCTTGTACTAAGAATATACCTGAGCATGCAAGGCATTTATCAATTGTTGAAAATAAGTCATTTGATCGAACTTTGTTCTCCGATTCGAAGAGTGTGAGAAGTATTTTGTTTCCCATCCAAGGAGTGGGTCTTGATAGTGAAACACTCTTGAATTCATGGATATCAAGATATAGATACTTGCGTTATGTAGATTTAAGTGATTCTTCATTTGAGGCTCTTCCGAATTCGATTTCTAAATTGGACCTTCTTCGAGTTCTCATTCTTTCTCATAACACCAAAATCAAAAGACTTCCCGATTGTATATGTGAACTCCAAAATTTACAAGTGTTGTCGGTTAGAGGATGCACAGAGCTTGAAGCATTGCCTAATGGACTAAGGAAGCTAATCAACCTTCGACAATTGTTTATAACAACAAAGCAATCTCTTCTGTCACATGATGAATTTGAAAGCATGATCCATCTTCAAACTTTGGGTTTTCATTATTGTGAGAATTTGAAGTTTTTTTCCAACCCTGCACAACAACTCACTTCCCTTGAAACATTGTTTGTTCAATCATGTGGGAGCCTAGATGCTTTGCCTCTTTATATCTTCCCAAAATTACAAACTCTTTTAATTTCAAACTGTGCTGCAAACACATTATTTTCCTTGGTAATTAAAAATCTTCCAAACCTTACGATGCTTCCCGAATTCTTAACAACCATGACTTGTCTTAAGAGGCTTCACATTGTGGATTGTCCTCAACTGTTGAGTCTTCCAACTGACATCCATCGCCTGGTTGTCCTTGAAGATTTGAGCATAGACGGTTGTCCTGAATTGTGCAGAAAATGTCAGCCTCGAGTTGGTGAGTACTGGCCCGTGATTTCTCATGTCAAACATGTTTTCATCGGAGAACCAAAAGGAGAGGAGAATTGA 2397 0.3805 MADSFLFDVADSLLGKLASYAHEEASKAWGVFGDLQGIKDTLAIVKYILLDAEDKKDQNHGLQEWLKQIQNIFYDAEDVLDEVECQNSRDQFVQASGSKRDRLNKVVADRNLFGLERMDVNASVESREMSYSHVDALDVIGRDNEKEEIIELLMKPRPHGGEDGDKGLCVIPMVGIGGLGKTTLAKLVFNDKRMDGVFQLKMWVCVSYDFDIRKIIVKIINSSSTPVLALAYQENIDHFDDEQLVSRLRHKLSDQKFLLVLDDIWNVNLSKWNELKDLIKVGAVGSKVLVTTRSMSIASMMGTVPVYTLEGLSLASCLSLFVKWAFKEGEEKKYPRLLEIGKDIVRKCRGIPLAARTLGSSLFSKFDLDKWELVRDSEIWNLRQNKDDILPVLKLSYDQMPSHLRHCFAYFSLFPKDYLFSCGEICNLWDVFGLLQSPNGSQKLEIISRDYIDELLSRSFLQDFEDFGHTCVFKVHDLVHDLAVYVAKEGFVVLNSCTKNIPEHARHLSIVENKSFDRTLFSDSKSVRSILFPIQGVGLDSETLLNSWISRYRYLRYVDLSDSSFEALPNSISKLDLLRVLILSHNTKIKRLPDCICELQNLQVLSVRGCTELEALPNGLRKLINLRQLFITTKQSLLSHDEFESMIHLQTLGFHYCENLKFFSNPAQQLTSLETLFVQSCGSLDALPLYIFPKLQTLLISNCAANTLFSLVIKNLPNLTMLPEFLTTMTCLKRLHIVDCPQLLSLPTDIHRLVVLEDLSIDGCPELCRKCQPRVGEYWPVISHVKHVFIGEPKGEEN 798
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g03357 798 Pfam Rx N-terminal domain 11 95 IPR041118 -
Vifa2g03357 798 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 125 410 IPR027417 -
Vifa2g03357 798 Gene3D - 312 396 IPR042197 -
Vifa2g03357 798 Gene3D - 123 304 IPR027417 -
Vifa2g03357 798 Pfam NB-ARC domain 162 398 IPR002182 GO:0043531
Vifa2g03357 798 SUPERFAMILY L domain-like 474 790 - -
Vifa2g03357 798 Gene3D Ribonuclease Inhibitor 534 682 IPR032675 -
Vifa2g03357 798 Gene3D - 10 111 - -
Vifa2g03357 798 PANTHER DISEASE RESISTANCE PROTEIN RP 63 761 IPR044974 GO:0006952
Vifa2g03357 798 Gene3D - 397 485 IPR036388 -
Vifa2g03357 798 PRINTS Disease resistance protein signature 348 362 - -
Vifa2g03357 798 PRINTS Disease resistance protein signature 597 613 - -
Vifa2g03357 798 PRINTS Disease resistance protein signature 170 185 - -
Vifa2g03357 798 PRINTS Disease resistance protein signature 251 265 - -
Vifa2g03357 798 CDD RX-CC_like 9 82 IPR038005 -
Vifa2g03357 798 Gene3D Ribonuclease Inhibitor 705 775 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g03357 Vifa-Chr2 964160056 964162641 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g03357 175 767 WRKY Transcription Factor Family AT5G45050 22.171 3.32e-09 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g03357 - - gmx:100794422 1027.7