LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vifa2g03329	ATGCGGACAATCTTATTCTCTACGGAAAGGGTGACTGCTAATAGCTGGGAAAGTGGACTGTTCATTTTATTCTTGGTTGTATTTGCTCTAATTGCGGCTGGTTACGTGTTTATTAAGGGGCTAGAAGACCCCTCAAGGAGCAAGTATAAACTTATACTAAACTGTTCTCTTATTGTTACTTCTGTGATACCTCCCGAGTTACCAATGGAATTATCTATAGCTGTTAATACTTCTCTGATTGCACTTGCACGCCGAGGAATTTTTTGCACAGAACCTTTTCGGATACCATTTGCTGGGAAGGTTGATATATGTTGTTTTGACAAGACTGGGACACTTACATCTGATGACATGGAATTTTCCGGACTGGTTGGGTTGACAGAAACTACAGATTTGGAATCTGACATGAGTAAAGTGCCTGTGCGAACAGTAGAAATCCTGGCTTCTTGCCATGCGTTGGTATTTGTTGAGAATAAGCTGAAGCATGCCACAGTTCAATATTTCCCCTCAACTTTTTTCCTCCTTAATCCATTGTCCTCTGGTTTATAG	546	0.4084	MRTILFSTERVTANSWESGLFILFLVVFALIAAGYVFIKGLEDPSRSKYKLILNCSLIVTSVIPPELPMELSIAVNTSLIALARRGIFCTEPFRIPFAGKVDICCFDKTGTLTSDDMEFSGLVGLTETTDLESDMSKVPVRTVEILASCHALVFVENKLKHATVQYFPSTFFLLNPLSSGL	181

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vifa2g03329	181	ProSitePatterns	E1-E2 ATPases phosphorylation site.	107	113	IPR018303	-
	Vifa2g03329	181	PANTHER	CATION-TRANSPORTING ATPASE-RELATED	1	159	IPR006544	GO:0006812\|GO:0016020\|GO:0019829\|GO:0140358
	Vifa2g03329	181	Gene3D	-	22	101	-	-
	Vifa2g03329	181	SUPERFAMILY	Calcium ATPase, transmembrane domain M	16	99	IPR023298	-
	Vifa2g03329	181	NCBIfam	HAD-IC family P-type ATPase	20	134	IPR001757	GO:0005215\|GO:0005524\|GO:0016020\|GO:0016887
	Vifa2g03329	181	Gene3D	-	102	116	IPR023214	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vifa2g03329	Vifa-Chr2	956378654	956379666	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vifa2g03329	1	159	Primary Pumps ATPases	AT5G23630	86.792	1.86e-92	290

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vifa2g03329	K14950		-	gmx:100807022	290.812

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Vifa2g03329	2	956378654	956379666	Vifa2g03329	2	956378654	956379666	ECH