Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g03318 ATGGATAAGTACGAGGCGGTTAAGGATTTGGGTTCTGGCAATTTTGGGGTTGCTAGGCTTATGAGAAACAAAGTTACAAAGGAACTTGTCGCCATGAAATACATCGAGCGTGGTTCCAAGATTGATGAGAACGTGGCCAGGGAGATCATGAATCATAGGTCTCTTCGGCATCCCAATATAATTCGATTCAAGGAGGTGATTTTGACTCCAACACATTTAGCAATAGTTATGGAGTATGCAGCTGGAGGAGAGCTTTTTGAGAGGATATGTAATGCTGGAAGGTTCAGCGAAGATGAGGCCAGGTATTTCTTTCAGCAGCTGATCTCAGGTGTCCATTTCTGTCATACCATGCAAATATGCCATAGAGATCTGAAGCTAGAGAATACCCTTTTAGATGGAAGTCCTGCACCTCGCTTAAAAATTTGTGACTTCGGTTATTCCAAGTCATCTTTGCTCCATTCACGTCCCAAATCAACGGTTGGAACACCGGCGTATATAGCACCAGAGGTTCTTTCTAGGAGGGAGTATGATGGAAAGATGGCTGATGTATGGTCATGTGGGGTGACTCTTTATGTAATGCTGGTCGGAGCATATCCGTTTGAGGACCAGGATGACCCTAAAAATTTTAGGAAAACAATTCAGCGTATAATGGCCATTCAATACAGAATTCCTGATTATGTTCACATATCTCAAGATTGCAGACACCTTATCTCTCGGATATTTGTTGCAAATCCATTGAGGCGAATTAATATTAGGGAAATCAAGAGCCACCCATGGTTTTTAAAGAATCTTCCAAGGGAGCTAACAGAATCAGCTCAAGCTATGTACTACCAGAGGGAAAATCCAAGCTTTCACTTACAAAGCGTGGATGATGTGATGAAAATCGTGGGAGAGGCAAGAAACCCGCCTCCAATATCTAGGCCCATCAAAGGTTTTGGCTGGGAAGGTGAAGAAGATTTGGAAGCAGAAGATTTGGAAGCAGAATTGGAGGAAGAGGAAGTCGAAGAAGATGAGTACGATAAGAGGGTCAAAGAGGTTCATGCAAGTGGAGAATTCCATATCAGTTAA 1068 0.4279 MDKYEAVKDLGSGNFGVARLMRNKVTKELVAMKYIERGSKIDENVAREIMNHRSLRHPNIIRFKEVILTPTHLAIVMEYAAGGELFERICNAGRFSEDEARYFFQQLISGVHFCHTMQICHRDLKLENTLLDGSPAPRLKICDFGYSKSSLLHSRPKSTVGTPAYIAPEVLSRREYDGKMADVWSCGVTLYVMLVGAYPFEDQDDPKNFRKTIQRIMAIQYRIPDYVHISQDCRHLISRIFVANPLRRINIREIKSHPWFLKNLPRELTESAQAMYYQRENPSFHLQSVDDVMKIVGEARNPPPISRPIKGFGWEGEEDLEAEDLEAELEEEEVEEDEYDKRVKEVHASGEFHIS 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g03318 355 PANTHER SERINE/THREONINE KINASE 3 298 - -
Vifa2g03318 355 Pfam Protein kinase domain 4 260 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g03318 355 ProSiteProfiles Protein kinase domain profile. 4 260 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g03318 355 SUPERFAMILY Protein kinase-like (PK-like) 1 295 IPR011009 -
Vifa2g03318 355 ProSitePatterns Serine/Threonine protein kinases active-site signature. 119 131 IPR008271 GO:0004672|GO:0006468
Vifa2g03318 355 CDD STKc_SnRK2 3 259 - -
Vifa2g03318 355 ProSitePatterns Protein kinases ATP-binding region signature. 10 33 IPR017441 GO:0005524
Vifa2g03318 355 SMART serkin_6 4 260 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g03318 355 Gene3D Phosphorylase Kinase; domain 1 1 79 - -
Vifa2g03318 355 Gene3D Transferase(Phosphotransferase) domain 1 80 267 - -
Vifa2g03318 355 FunFam Serine/threonine-protein kinase SRK2E 1 79 - -
Vifa2g03318 355 FunFam Serine/threonine-protein kinase SRK2A 80 268 - -
Vifa2g03318 355 Coils Coil 315 342 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g03318 Vifa-Chr2 950644150 950647183 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g03318 3 263 CBL-interacting serine-threonine protein kinases AT4G24400 42.593 3.91e-66 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_OST1L Vifa2g03318 Pkinase 1.5e-69 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g03318 K14498 - gmx:547811 638.262
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g03318 2 950644150 950647183 Vifa2g03318 2 950644150 950647183 PCT