Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g03315 ATGTCAAGCGGAAGGAAAAGTCAAGGTAGTCAAAAGATCGAAATGAAAAAGATGAGCAACGAGAGTAACCTGCAAGTGACTTTTTCAAGACGACGTAGCAGACTCTTCAAGAAAGCCAGTGAACTTTCAACCCTATGTGATGCACAAATTGCTCTTGTTGTATTCTCACCTAGTGAAAAGGTATTTTCTTTTGGACACCCCAATATAGACACAGTCATAGATCATTATCTCTCTCGAGTTCCACCCCAAAACAACGACATCATGGAATTCATTGAGGCTTGTCGCTAA 288 0.4062 MSSGRKSQGSQKIEMKKMSNESNLQVTFSRRRSRLFKKASELSTLCDAQIALVVFSPSEKVFSFGHPNIDTVIDHYLSRVPPQNNDIMEFIEACR 95
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g03315 95 PRINTS MADS domain signature 10 30 IPR002100 GO:0003677|GO:0046983
Vifa2g03315 95 PRINTS MADS domain signature 30 45 IPR002100 GO:0003677|GO:0046983
Vifa2g03315 95 PRINTS MADS domain signature 45 66 IPR002100 GO:0003677|GO:0046983
Vifa2g03315 95 SMART madsneu2 8 67 IPR002100 GO:0003677|GO:0046983
Vifa2g03315 95 CDD MADS_MEF2_like 9 77 IPR033896 GO:0000977|GO:0045944
Vifa2g03315 95 PANTHER MADS BOX PROTEIN 11 83 - -
Vifa2g03315 95 FunFam Agamous-like MADS-box protein AGL62 20 86 - -
Vifa2g03315 95 MobiDBLite consensus disorder prediction 1 25 - -
Vifa2g03315 95 Gene3D - 20 88 IPR036879 GO:0003677|GO:0046983
Vifa2g03315 95 ProSiteProfiles MADS-box domain profile. 8 68 IPR002100 GO:0003677|GO:0046983
Vifa2g03315 95 SUPERFAMILY SRF-like 10 84 IPR036879 GO:0003677|GO:0046983
Vifa2g03315 95 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 17 64 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g03315 Vifa-Chr2 950618008 950618295 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g03315 5 95 Type I MADS-box Gene Family AT5G60440 63.441 3.50e-36 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Vifa2g03315 SRF-TF 1.9e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g03315 - - mtr:25488967 160.229