Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g03314 ATGTCAAGCGAAAGGAAAAGTCAAGGTAGACAAAAGATCGAAATGAAAAAGATGAGCAACGAGAGTAACCTGCAAGTGACTTTTTCAAGACGACGTAGAGGACTCTTCAAGAAAGCCAGTGAACTTTCAACCCTATGTGATGCAAAAATTTCTCTTGTTGTATTCTCACCTAGTGAAAAGTTTACTAAAATCAATAACACACTAGACATTAAAAAGAAACTTGGTGATGAACTAAGCCATTTGCGCAAAGAGTTTGAGGCTCAATTTTGTTGGACATGTTCAATTGATAAGATGAATTGGGCTCAACTTGAAATGTTCAAGAAAGATTTGGAGGAGCTTAGGAACCTTGTTGCACAACATGCTATTAACCTTGTAATTCAGGATACTCATACTCAAACTCTTCCATTTTGTGTTGAAAGTGTTTCGCCATCTAACATCCCTTTCCAACACCAATTAATTCCTCAACAAGGTCAAATGTTTCCACCATAA 489 0.3681 MSSERKSQGRQKIEMKKMSNESNLQVTFSRRRRGLFKKASELSTLCDAKISLVVFSPSEKFTKINNTLDIKKKLGDELSHLRKEFEAQFCWTCSIDKMNWAQLEMFKKDLEELRNLVAQHAINLVIQDTHTQTLPFCVESVSPSNIPFQHQLIPQQGQMFPP 162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g03314 162 Coils Coil 103 123 - -
Vifa2g03314 162 CDD MADS 9 60 - -
Vifa2g03314 162 ProSiteProfiles MADS-box domain profile. 8 68 IPR002100 GO:0003677|GO:0046983
Vifa2g03314 162 SMART madsneu2 8 67 IPR002100 GO:0003677|GO:0046983
Vifa2g03314 162 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 17 61 IPR002100 GO:0003677|GO:0046983
Vifa2g03314 162 SUPERFAMILY SRF-like 9 66 IPR036879 GO:0003677|GO:0046983
Vifa2g03314 162 Gene3D - 20 84 IPR036879 GO:0003677|GO:0046983
Vifa2g03314 162 PRINTS MADS domain signature 30 45 IPR002100 GO:0003677|GO:0046983
Vifa2g03314 162 PRINTS MADS domain signature 10 30 IPR002100 GO:0003677|GO:0046983
Vifa2g03314 162 PRINTS MADS domain signature 45 66 IPR002100 GO:0003677|GO:0046983
Vifa2g03314 162 PANTHER MADS BOX PROTEIN 10 119 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g03314 Vifa-Chr2 950538576 950539199 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g03314 5 121 Type I MADS-box Gene Family AT5G60440 37.576 9.22e-25 95.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Vifa2g03314 SRF-TF 3.8e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g03314 - - mtr:11438274 167.162