Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g03313 ATGTCAAGCGGAAGGAAAAGTCAAGGTAGTCAAAAGATCAAAATGAAAAAAATGAGCAACGAGAGTAACCTGCAAGTGACTTTTTCAAGACGTCGTAGCAGAATCTTCAAGAAAGCCAGTGAACTTTCAACCCTGTGTGATGCACAAATTGCTCTTGTTGTATTCTCACCTAGTGAAAAGTTATTTTCTTTTGGACACCCCAATATTGACACAGTCATAGATCGTTATCTCTCTCGAGTTCCACCCCAAAACCAGGACATCATAGAATTCATTGAAGCTCGTCGTAAAGCTAATGTCTGTGAGATCAATACTCAGTTGACTCAAATCAATAATACACTAGACATTGAAAAGAAACTTGGTGATGAACTAAGCCATTTGCGCAAAGAGTTTGAGGCTCAGTTTTGGTAG 408 0.3897 MSSGRKSQGSQKIKMKKMSNESNLQVTFSRRRSRIFKKASELSTLCDAQIALVVFSPSEKLFSFGHPNIDTVIDRYLSRVPPQNQDIIEFIEARRKANVCEINTQLTQINNTLDIEKKLGDELSHLRKEFEAQFW 135
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g03313 135 PRINTS MADS domain signature 30 45 IPR002100 GO:0003677|GO:0046983
Vifa2g03313 135 PRINTS MADS domain signature 10 30 IPR002100 GO:0003677|GO:0046983
Vifa2g03313 135 PRINTS MADS domain signature 45 66 IPR002100 GO:0003677|GO:0046983
Vifa2g03313 135 SUPERFAMILY SRF-like 10 83 IPR036879 GO:0003677|GO:0046983
Vifa2g03313 135 SMART madsneu2 8 67 IPR002100 GO:0003677|GO:0046983
Vifa2g03313 135 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 17 64 IPR002100 GO:0003677|GO:0046983
Vifa2g03313 135 FunFam Agamous-like MADS-box protein AGL62 20 86 - -
Vifa2g03313 135 PANTHER MADS BOX PROTEIN 11 130 - -
Vifa2g03313 135 ProSiteProfiles MADS-box domain profile. 8 68 IPR002100 GO:0003677|GO:0046983
Vifa2g03313 135 Gene3D - 20 88 IPR036879 GO:0003677|GO:0046983
Vifa2g03313 135 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g03313 Vifa-Chr2 950536345 950536752 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g03313 5 135 Type I MADS-box Gene Family AT5G60440 53.333 1.98e-44 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Vifa2g03313 SRF-TF 1.1e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g03313 - - mtr:11438274 201.445