Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g03308 ATGAAAAAGATGAGCAACGAGAGTAACCTGCAAGTGACTTTATCAAGACGACGTAGCAGACTCTTATTGAAAGCCAGTGAACTTTGCACCCTATGTGATGCACAAATTTCTCTTGTTGTATTCTCACCTAGTGAAAAGGTATTTTCTTTTGGTAACCCCAATATTGATACAGTCATAGATCGTTATCTCTCTCGAGTTCCATCCCAAAAAAGCGACATCATGGAATTCATTGAGGCTCGTCGTAAAGCTAATGTGTGTGAGATCAATACTCAGTTGACTCAAATCAATAAAACATTAGACATTGTAAAGAAACTTGGTGATGAACTGAGCCATTTGCGCAAAGATTTTGAGACTCGTTTTGGGTGGACTTTTTCAATTGATAAGATGAATTGGGCTCAACTTGAAATGTTCAAGAAGGCTTTGGAGGATCCTAGGAACCTTGTTGCACAACATGCTATTAACCTTGTAATTCAGTATACTCATACTCAAACTCTTCCATTTTGTGTTGACAGTATTTCCCCATCTAACATCCCTTTCCAACACCAATTAATTCCTCAACAAGGTCAAATGTTTCCACCACAATATTATCAGAAACATTTGTTGCATCCTTAA 612 0.3758 MKKMSNESNLQVTLSRRRSRLLLKASELCTLCDAQISLVVFSPSEKVFSFGNPNIDTVIDRYLSRVPSQKSDIMEFIEARRKANVCEINTQLTQINKTLDIVKKLGDELSHLRKDFETRFGWTFSIDKMNWAQLEMFKKALEDPRNLVAQHAINLVIQYTHTQTLPFCVDSISPSNIPFQHQLIPQQGQMFPPQYYQKHLLHP 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g03308 203 PRINTS MADS domain signature 31 52 IPR002100 GO:0003677|GO:0046983
Vifa2g03308 203 PRINTS MADS domain signature 16 31 IPR002100 GO:0003677|GO:0046983
Vifa2g03308 203 PANTHER MADS BOX PROTEIN 1 148 - -
Vifa2g03308 203 SUPERFAMILY SRF-like 1 71 IPR036879 GO:0003677|GO:0046983
Vifa2g03308 203 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 3 50 IPR002100 GO:0003677|GO:0046983
Vifa2g03308 203 SMART madsneu2 1 53 IPR002100 GO:0003677|GO:0046983
Vifa2g03308 203 Gene3D - 6 75 IPR036879 GO:0003677|GO:0046983
Vifa2g03308 203 ProSiteProfiles MADS-box domain profile. 1 54 IPR002100 GO:0003677|GO:0046983
Vifa2g03308 203 FunFam Agamous-like MADS-box protein AGL62 6 72 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g03308 Vifa-Chr2 950453157 950453768 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g03308 1 152 Type I MADS-box Gene Family AT5G60440 45.806 6.82e-39 134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Vifa2g03308 SRF-TF 8.2e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g03308 - - mtr:11438274 209.92