Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g03300 ATGGCCACAGAAATTTGTGGCGGGTCTCTATTCTTATCCGTTAAAACTGAACTTCAACGCCAAAAGCCATTCCTCCATTCTCAACGAACAACAACAACCTCCACTCGATTCAACTCATCCAAACCTCGCTTCTCTTTCCGCTCTTCAAATGCATCCTCCTTTCACCACCGCAACTCCTCCGTCTTCTGCCGCGTTGCTACCTCCGATACACTCTCCGACTCCGAATCCACCGCCAAAGACGGTCAGGATCGTCTCTCCAAGGTGCCGGTGTCTAATATAAGGAACTTTTCCATCATTGCTCATATTGACCATGGAAAATCCACTTTAGCAGATAAATTGCTACAGGTTACTGGCACCGTTCCTCAGCGAGAGATGAAGGAACAGTTTCTTGATAACATGGATTTGGAGAGGGAAAGAGGCATCACTATTAAGCTTCAGGCAGCTCGTATGCGCTATGTGTTTGAAAATAAACCATATTGCTTAAATTTGATAGATACTCCAGGACACGTTGACTTCTCGTACGAGGTTTCTCGATCGCTTGCTGCATGTGAGGGTGCTCTCCTTGTGGTAGATGCTTCTCAGGGGGTTGAAGCGCAAACACTAGCTAATGTTTATTTAGCTTTGGCTAACAACTTAGAAATTATCCCCGTTTTGAACAAAATAGATCTTCCAGGTGCAGAACCAGAACGAGTAATCAAGGAGATTGAAGAGGTTATAGGTCTAGATTGTAGCAACGCCATTCTCTGCTCTGCAAAGGAGGGAATAGGTATAATGGAAATTCTCAATGAAATTGTTGCAAAAATTCCCCCACCTGCTGATACATCAAAAAAGCCATTGAGGGCTTTAATATTTGATAGTTACTATGATCCATATAGAGGTATTATTGTATACTTTCGAGTTGTAGATGGCACTATTAAGAAAGGTGACAGAGTTACTTTTATGGCCAGTGGTAAGGATTATTTTGCCGATGAAATTGGAGTTTTGTCTCCCAATCAACTTCAGGCTGACGAATTGTTTGCTGGTGAGGTGGGCTATCTATCTGCATCAATAAGAACAGTAGCTGATGCCAGAGTGGGTGACACGATCACTCACCATTTTATAAAGGCAGAGAGTTCACTACCTGGATATGAGGAAGCCACTCCTATGGTGTTCTGTGGCCTGTTTCCCGTTGATGCTGACCAATTTCCTGATCTACGAGATGCACTTGAGAAGCTTCAACTCAATGATGCTGCACTAAAGTTTGAACCTGAGACCTCAAGTGCTATGGGATTTGGTTTTAGATGTGGATTTCTGGGACTTCTCCACATGGAAATTGTTCAGGAGAGACTTGAGAGAGAATACAATTTGAGCCTGATAACTACCGCCCCAAGTGTTGTATACAGAGTAACCTGTGTTAATGGTGATACTGTTGAATGCTCAAATCCATCTTTACTTCCTGAGCCTGGTAAAAGAAAATCAATTGAGGAGCCAGTTGTTAAGATTGAGATGCTTACGCCGAAGGACTATATTGGTCCTCTTATGGAACTGGCTCAAGAAAGAAGAGGGCAGTTCAAAGAAATGAAGTTTATCACTGAAATTAGGGCATCACTCACCTATGAATTACCACTGGCTGAGATGGTTGGTGATTTCTTTGACCAGTTGAAGTCAAGAAGTAAGGGCTACGCTAGTATGGAGTATACTGTTATCGGTTACAAAGAAAGTGATTTAACTAAACTCGACATACAGATAAATGGTGAATGTGTGGAGCCATTGGCTACGATTGTGCACAGAGATAAGGCATATTCTGTGGGAAGGGCGTTGACTCTAAAGTTGAAGGAGCTCATACCACGACAAATGTTTAAAATACCAATTCAAGCATGCATAGGAGCTAAAGTGATTGCTAGTGAATCTTTATCTGCAATAAGAAAAGATGTATTAGCCAAATGCTACGGTGGAGACATTACGAGAAAAAAGAAATTGCTTAAGAAACAGGCTGAAGGAAAGAAAAGAATGAAATCAATTGGTAAAGTTGATGTGCCTCAAGAAGCTTTTATGGCGGTTTTGAAACTTGAAAAGGAGGTAATCTGA 2067 0.419 MATEICGGSLFLSVKTELQRQKPFLHSQRTTTTSTRFNSSKPRFSFRSSNASSFHHRNSSVFCRVATSDTLSDSESTAKDGQDRLSKVPVSNIRNFSIIAHIDHGKSTLADKLLQVTGTVPQREMKEQFLDNMDLERERGITIKLQAARMRYVFENKPYCLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALANNLEIIPVLNKIDLPGAEPERVIKEIEEVIGLDCSNAILCSAKEGIGIMEILNEIVAKIPPPADTSKKPLRALIFDSYYDPYRGIIVYFRVVDGTIKKGDRVTFMASGKDYFADEIGVLSPNQLQADELFAGEVGYLSASIRTVADARVGDTITHHFIKAESSLPGYEEATPMVFCGLFPVDADQFPDLRDALEKLQLNDAALKFEPETSSAMGFGFRCGFLGLLHMEIVQERLEREYNLSLITTAPSVVYRVTCVNGDTVECSNPSLLPEPGKRKSIEEPVVKIEMLTPKDYIGPLMELAQERRGQFKEMKFITEIRASLTYELPLAEMVGDFFDQLKSRSKGYASMEYTVIGYKESDLTKLDIQINGECVEPLATIVHRDKAYSVGRALTLKLKELIPRQMFKIPIQACIGAKVIASESLSAIRKDVLAKCYGGDITRKKKLLKKQAEGKKRMKSIGKVDVPQEAFMAVLKLEKEVI 688
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g03300 688 NCBIfam translation elongation factor 4 92 683 IPR006297 GO:0005525
Vifa2g03300 688 SUPERFAMILY EF-G C-terminal domain-like 380 458 IPR035647 -
Vifa2g03300 688 CDD EF4_III 381 456 - -
Vifa2g03300 688 Pfam Elongation factor G C-terminus 487 573 IPR000640 -
Vifa2g03300 688 Pfam Elongation factor Tu GTP binding domain 92 269 IPR000795 GO:0003924|GO:0005525
Vifa2g03300 688 Gene3D Translation factors 274 373 - -
Vifa2g03300 688 PRINTS GTP-binding elongation factor signature 138 146 IPR000795 GO:0003924|GO:0005525
Vifa2g03300 688 PRINTS GTP-binding elongation factor signature 95 108 IPR000795 GO:0003924|GO:0005525
Vifa2g03300 688 PRINTS GTP-binding elongation factor signature 162 172 IPR000795 GO:0003924|GO:0005525
Vifa2g03300 688 PRINTS GTP-binding elongation factor signature 214 223 IPR000795 GO:0003924|GO:0005525
Vifa2g03300 688 PRINTS GTP-binding elongation factor signature 178 189 IPR000795 GO:0003924|GO:0005525
Vifa2g03300 688 PANTHER TRANSLATION FACTOR GUF1-RELATED 70 683 IPR006297 GO:0005525
Vifa2g03300 688 SUPERFAMILY Translation proteins 270 365 IPR009000 -
Vifa2g03300 688 Gene3D - 568 642 IPR038363 -
Vifa2g03300 688 FunFam Translation factor GUF1, mitochondrial 274 372 - -
Vifa2g03300 688 FunFam Translation factor GUF1, mitochondrial 374 455 - -
Vifa2g03300 688 CDD EF4_II 279 364 - -
Vifa2g03300 688 FunFam Translation factor GUF1, mitochondrial 568 642 - -
Vifa2g03300 688 Pfam Elongation factor Tu domain 2 294 363 IPR004161 GO:0005525
Vifa2g03300 688 Gene3D Elongation Factor G (Translational Gtpase), domain 3 374 455 - -
Vifa2g03300 688 Hamap Translation factor GUF1 homolog, organellar chromatophore [lepA]. 85 685 IPR027518 -
Vifa2g03300 688 SUPERFAMILY EF-G C-terminal domain-like 487 581 IPR035647 -
Vifa2g03300 688 Gene3D - 90 273 IPR027417 -
Vifa2g03300 688 CDD lepA_C 489 568 IPR035654 -
Vifa2g03300 688 CDD LepA 94 271 - -
Vifa2g03300 688 SMART EFG_C_a 486 572 IPR000640 -
Vifa2g03300 688 Pfam GTP-binding protein LepA C-terminus 576 682 IPR013842 -
Vifa2g03300 688 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 91 272 IPR000795 GO:0003924|GO:0005525
Vifa2g03300 688 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 88 300 IPR027417 -
Vifa2g03300 688 Gene3D - 456 567 - -
Vifa2g03300 688 FunFam Translation factor GUF1, mitochondrial 456 566 - -
Vifa2g03300 688 FunFam Elongation factor 4 90 273 - -
Vifa2g03300 688 NCBIfam small GTP-binding protein domain 94 264 IPR005225 GO:0005525
Vifa2g03300 688 Hamap Elongation factor 4 [lepA]. 88 686 IPR006297 GO:0005525
Vifa2g03300 688 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 131 146 IPR031157 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g03300 Vifa-Chr2 948323151 948340124 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g03300 93 303 Eukaryotic Initiation Factors Gene Family AT3G22980 35.714 2.74e-26 113
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g03300 K21594 - gmx:100784073 1143.26
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g03300 2 948323151 948340124 Vifa2g03300 2 948323151 948340124 ECH