Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g03273 ATGGGTGACGGCAACCGTTCGAACAGCAACAAACCAGAGTGGCTTCAGCAGTACGATCTGATCGGGAAGATCGGAGAAGGAACCTACGGTCTCGTCTTCCTCGCTCGAATCAAGTCCGCCACCAACCGCGGAAAATCCATCGCCATCAAGAAATTCAAGCAATCTAAAGATGGCGATGGTGTCTCTCCCACCGCCATTCGTGAAATCATGTTGCTGAGGGAGATCACTCATGAAAATGTAGTGAAGCTTGTGAATGTTCACATCAATCAGACAGACATGTCTCTGTATCTAGCCTTTGATTATGCTGAACATGACCTTTATGAAATAATAAGACATCATAGAGACAAGGTCAACCAAGCTATTAACCAGTACACTGTTAAATCGATACTATGGCAGTTGCTCAATGGACTGAACTATCTGCACAGTAATTGGATAATACATCGAGATTTGAAGCCATCGAATATACTGGTTATGGGTGATGGGGAGGAACATGGAGTTGTTAAAGTTGCTGACTTTGGGCTTGCAAGGATATATCAAGCCCCTCTGAAGCCATTATCTGAAAATGGGGTTGTTGTAACCATTTGGTATCGTGCTCCCGAGTTGCTTCTTGGAGCAAAACATTATACCAGTGCTGTTGATACGTGGGCTGTGGGATGCATTTTTGCTGAGTTGTTGACCTTGAAGCCACTGTTTCAAGGTGCAGAAGTCAAAGCTACACCAAATCCTTTTCAGCTTGATCAACTTGACAAGATATTCAAGGTTTTAGGCCATCCCACATCAGAAAAATGGCCTTCCTTACAACATCTTCCCCATTGGCAACAGGATACACAACATATACAAGGACACAAATATGACAATGCTAATCTCTATAGTGTTGTACACCTATCTCCAAAAAGTCCTGCATATGACCTTTTGTCAAAGATGCTTGAATATGATCCTAAAAGGCGTATAACAGCAGCACAAGCTTTGGAGCATGAGTATTTCAAAATGGAACCACAGCCTGGGCGGAATGCACTTGTACCATGCCAACCTGGAGAGCCATTTGTGAATTATCCCACACGTCCAGTGGACACAACGACAGATTTTGAAGGGACAACTAACATGCAGCAATCACAGCCGGTTTCGTCTGGAGCTGCTATTGCTGGAAACATGCCTGGTGGTCATGTATCTAATAGACCTGTCCCTCGACCAATGAATGTTGGTATGCAAAGAATGCATCAGCTGCAAGCTTATAACCTCCCATCCCAGCCAGGGATGGGTAGTGGAATTAATCCTGCTGGCATCCCAATGCAACGAGGTGTTCCGCAACAGGCCCATCAGCAGCAACAGATGAGGAGAAAAGACCAAATGGGAATGCCAGGATACCCTCCGCAGCAGAAACCAAGACGTATGTAA 1395 0.4495 MGDGNRSNSNKPEWLQQYDLIGKIGEGTYGLVFLARIKSATNRGKSIAIKKFKQSKDGDGVSPTAIREIMLLREITHENVVKLVNVHINQTDMSLYLAFDYAEHDLYEIIRHHRDKVNQAINQYTVKSILWQLLNGLNYLHSNWIIHRDLKPSNILVMGDGEEHGVVKVADFGLARIYQAPLKPLSENGVVVTIWYRAPELLLGAKHYTSAVDTWAVGCIFAELLTLKPLFQGAEVKATPNPFQLDQLDKIFKVLGHPTSEKWPSLQHLPHWQQDTQHIQGHKYDNANLYSVVHLSPKSPAYDLLSKMLEYDPKRRITAAQALEHEYFKMEPQPGRNALVPCQPGEPFVNYPTRPVDTTTDFEGTTNMQQSQPVSSGAAIAGNMPGGHVSNRPVPRPMNVGMQRMHQLQAYNLPSQPGMGSGINPAGIPMQRGVPQQAHQQQQMRRKDQMGMPGYPPQQKPRRM 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g03273 464 Gene3D Transferase(Phosphotransferase) domain 1 101 343 - -
Vifa2g03273 464 Pfam Protein kinase domain 18 328 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g03273 464 FunFam Cyclin-dependent kinase e-1 6 101 - -
Vifa2g03273 464 Gene3D Phosphorylase Kinase; domain 1 4 100 - -
Vifa2g03273 464 ProSitePatterns Serine/Threonine protein kinases active-site signature. 145 157 IPR008271 GO:0004672|GO:0006468
Vifa2g03273 464 PANTHER CELL DIVISION PROTEIN KINASE 16 334 - -
Vifa2g03273 464 SUPERFAMILY Protein kinase-like (PK-like) 13 330 IPR011009 -
Vifa2g03273 464 ProSiteProfiles Protein kinase domain profile. 18 328 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g03273 464 MobiDBLite consensus disorder prediction 419 464 - -
Vifa2g03273 464 SMART serkin_6 18 328 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g03273 464 FunFam Putative cyclin-dependent kinase E-1 102 341 - -
Vifa2g03273 464 CDD STKc_CDK8_like 17 328 - -
Vifa2g03273 464 ProSitePatterns Protein kinases ATP-binding region signature. 24 51 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g03273 Vifa-Chr2 937468160 937479584 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g03273 1 464 Core Cell Cycle Gene Families AT5G63610 73.904 0.0 694
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CDK8 Vifa2g03273 Pkinase 1.8e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g03273 K02208 - gmx:100813433 832.017