Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g03270 ATGCAAGGTGAATTAGAGTTACCACCTGGTTTCAGATTTCATCCAACTGATGAAGAATTGGTGAATCACTACTTGTGTAGAAAATGTGCTGGTCAATCAATTTCTGTTCCTGTTGTTAAAGAAGTTGATTTGTATAAGTTTGATCCATGGCAGCTTCCTGAAATGGGTTATCACAGTGAGAAAGAATGGTATTTCTTCTCTCCGAGAGATCGAAAGTACCCGAACGGTTCTCGGCCTAACCGGGCTGCCGGAAGTGGTTACTGGAAGGCTACCGGAGCTGATAAACCAATTGGGAAAGTGAAGCCAATGGGAATAAAAAAGGCACTGGTTTTCTATGCTGGTAAAGCCCCCAAAGGAGTGAAAACTAATTGGATTATGCATGAATATCGTCTTGCCAACGTTGATAGATCCGCCGGCAAGAAAAACAATTTGAGGCTTGATGATTGGGTGTTGTGTAGAATTTACAACAAGAAAGGAAAGATTGAGAAATTCAACACTGGCAACACAGTAGAGGTTCATAATTACTTTGAGCATGAAGAAGAACATGAGAGAAAGCCAGAAGTTCAGAAGTTGGTGAATTACCAATTGTACATGGACACATCGGATTCAGTTCCGAAGCTGCACACGGACTCGAGCAGCTCCGGGCACGTGGTTTCGCCGGATGTCACGTGCGACAGAGAGGTGCAGAGTGAACCCAAATGGAATGAACTTGGGATACAGCTGGATGACGCGTTTGGTTTTGAGTTCAATTACTTGGATAATAATAGCCTTTCATTTGAGTATGAGGATGACCCTTTTGGGACCAATGATCAGTACCAAATCAACCAGCTTTCGCCGTTACAGGATATGTTCATGTACCAACAAAAGCCATTTTGA 876 0.4292 MQGELELPPGFRFHPTDEELVNHYLCRKCAGQSISVPVVKEVDLYKFDPWQLPEMGYHSEKEWYFFSPRDRKYPNGSRPNRAAGSGYWKATGADKPIGKVKPMGIKKALVFYAGKAPKGVKTNWIMHEYRLANVDRSAGKKNNLRLDDWVLCRIYNKKGKIEKFNTGNTVEVHNYFEHEEEHERKPEVQKLVNYQLYMDTSDSVPKLHTDSSSSGHVVSPDVTCDREVQSEPKWNELGIQLDDAFGFEFNYLDNNSLSFEYEDDPFGTNDQYQINQLSPLQDMFMYQQKPF 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g03270 291 ProSiteProfiles NAC domain profile. 7 157 IPR003441 GO:0003677|GO:0006355
Vifa2g03270 291 SUPERFAMILY NAC domain 3 157 IPR036093 GO:0003677|GO:0006355
Vifa2g03270 291 Gene3D NAC domain 16 163 IPR036093 GO:0003677|GO:0006355
Vifa2g03270 291 FunFam NAC transcription factor 16 161 - -
Vifa2g03270 291 PANTHER NAC TRANSCRIPTION FACTOR 56 7 200 - -
Vifa2g03270 291 Pfam No apical meristem (NAM) protein 8 131 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g03270 Vifa-Chr2 936759556 936760640 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g03270 1 291 NAC Transcription Factor Family AT1G01720 62.500 3.48e-124 354
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vifa2g03270 NAM 1.2e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g03270 - - gmx:100814504 470.314