Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g03265 ATGGCGATGGTGACGACAAGAAGAAAAGAACAACATGGACTGGAGAATAACATAGTGTACCTTTTCATGATTATACTTCATACCTGTCTTGGCCTGGTGCGCTTTCAGCTTAGTGGTTCCTCAGATTTCATGGATTTACAATGCTACAATGAGGTTGCAGCTTTGTTTATGCTTCTAAGATTTGATTTATTCATAATATATTCTAAACTGAGCAAAAATTTTGCAGCTTTGGGTTCTCTTAACAAACTTATTGAAGGATGTGGAACATCAATAACACACATGAAAAAATTGGTGTGGTTGATGAACAATGGATTGTTCATCAAACAATTCCTACTCTTGGGAGAATATGATCATGGAAAAGACAAATATGATGCGGCATTTGGTTTGCTAGCCTTCCAGGAGATCGAACTTTCGTTTGGTCACCCAATAGAAACTCACCTACATCTCAAGAAGCAATTTTGGAGCTTGACACAACAGGAAACCTCGTCCTCGTCGACAAAAAACACAAACAACCACCCTATATGGCAGAGTTTTTCTCAACCTTCAAACACACTTCTCCCAAACCAGCCTCTAACAGTTTCTTCAGAATTAACATCATCAAAATCCTCATCTCATGGTGGCTACTATGCTCTCAAAATGCTTCAGCAACCAACTTCTTTAAGTCTTGCACTAACTTACAATCTTCCAGAAAGTTACCAAACTTTTGATGAAAATGAATCATATGCAAACTATTCTTATTGGCAAGGTCCTGATATTTCCAATGTAACCGGAGAAGTTATCGCGGTTTTAGATCAAGCCGGAAGCTTTGGAATTGTATATGGAAATTCATCTGATGGTGCAGTTTATGTTTATAAGAATGATAATGATGATGCAGGTTTAGCTTCTGCAATTCATCAATCTACACCGTTAACCGTTCTTAGGAGACTGACACTCGAAGAGAATGGAAATCTGAGGTTATACCGATGGGAAGACGTAAATGGATCGAAACAATGGGTGTCACAGTGGGCTGCAGTTTCAAATCCATGTGATATTGGTGGAATTTGTGGTAATGGAGTATGTAAATTGGATAAAACTAAGACTAATGCTTCTTGCACTTGTTTACCAGGAACTTCTAAACTAGAAAGAGATGGACAATGTTATGAGAATTCATCTCTGGTTGGAAAATGTACTAATGGAAAAAACGAAAACAAGACATCGAGTTTTAGAATTTCGACAGTGCAACAAACTAATTATTATTTTTCTGAATCTTCAATAATAGCTAATTATAGTGAGAGTGATGTTTCTTCTGTATCAAAATGCGGCGATGCATGTTTGTCCGATTGTGATTGTGTTGCTTCTGTTTATGGACTAAATGAAGAAAGACCTTTTTGTTGGGTGTTGAGGAGTTTAAGTTTCGGCGGTTTTGAAGATACGAGCTCTACTTTGTTTGTGAAGGTTCGAGCAAATAGTTCATGGACACCAGAAGGACAAGAGGGAAGGTCTAATAACAGTTCTTCTGATGGAATGGGGAGTGCTAAGGAAAAGGCTGTGATTATTCCAATTGTTCTAGGCATGATAGTTCTCATTATTTTACTCACTATGTTACTGTATTACAGTGTTCATAGAAAAAGAACTTTGAAAAGAGAGATGGAATGTTCATTGGTCTTATCAGGTGCTCCAGTGAATTTTACTTACCGCGCTTTGCAGATCAAGACAAGTAACTTTTCGCAGCTTCTAGGAACAGTTGGATTTGGAAGTGTGTATAAAGGAAGCTTAGGAGATGGTACCTTAGTCGCGGTGAAGAAACTTGATAAGATTTTGCCTCATGGAGAGAAAGAATTTATCACCGAAGTAAACACGATTGGCTCAATGCATCATATGAATTTGGTTCGTTTATGTGGTTTTTGTTCTGAGGGACCTCAGAGGCTTTTAGTTTATGAGTTCATGAAGAATGGTTCATTGGATCAGTGGATCTTCCCTTCGATTCGAGGACCAGATAGATTGCTCGATTGGCAAACTCGTTTTGATATAGCCAAAAATACTGCACAAGGGATTGCATACTTTCATGAGCAGTGTAGAAACAAGATAATACATTGTGACATCAAGCCAGAAAATATATTGTTAGATGAAAACTTTTGTCCCAAGGTATCTGATTTTGGACTTGCTAAATTGATGGCAAGGGAACATTCTCATGTGGTAACAATGGTAAGAGGCACTAGAGGCTATTTGGCACCAGAATGGAGAATTTGA 2229 0.38 MAMVTTRRKEQHGLENNIVYLFMIILHTCLGLVRFQLSGSSDFMDLQCYNEVAALFMLLRFDLFIIYSKLSKNFAALGSLNKLIEGCGTSITHMKKLVWLMNNGLFIKQFLLLGEYDHGKDKYDAAFGLLAFQEIELSFGHPIETHLHLKKQFWSLTQQETSSSSTKNTNNHPIWQSFSQPSNTLLPNQPLTVSSELTSSKSSSHGGYYALKMLQQPTSLSLALTYNLPESYQTFDENESYANYSYWQGPDISNVTGEVIAVLDQAGSFGIVYGNSSDGAVYVYKNDNDDAGLASAIHQSTPLTVLRRLTLEENGNLRLYRWEDVNGSKQWVSQWAAVSNPCDIGGICGNGVCKLDKTKTNASCTCLPGTSKLERDGQCYENSSLVGKCTNGKNENKTSSFRISTVQQTNYYFSESSIIANYSESDVSSVSKCGDACLSDCDCVASVYGLNEERPFCWVLRSLSFGGFEDTSSTLFVKVRANSSWTPEGQEGRSNNSSSDGMGSAKEKAVIIPIVLGMIVLIILLTMLLYYSVHRKRTLKREMECSLVLSGAPVNFTYRALQIKTSNFSQLLGTVGFGSVYKGSLGDGTLVAVKKLDKILPHGEKEFITEVNTIGSMHHMNLVRLCGFCSEGPQRLLVYEFMKNGSLDQWIFPSIRGPDRLLDWQTRFDIAKNTAQGIAYFHEQCRNKIIHCDIKPENILLDENFCPKVSDFGLAKLMAREHSHVVTMVRGTRGYLAPEWRI 742
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g03265 742 ProSitePatterns Serine/Threonine protein kinases active-site signature. 689 701 IPR008271 GO:0004672|GO:0006468
Vifa2g03265 742 FunFam Protein kinase superfamily protein 642 717 - -
Vifa2g03265 742 Pfam Protein kinase domain 569 740 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g03265 742 ProSiteProfiles Protein kinase domain profile. 566 742 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g03265 742 Gene3D Phosphorylase Kinase; domain 1 530 641 - -
Vifa2g03265 742 Gene3D Transferase(Phosphotransferase) domain 1 642 741 - -
Vifa2g03265 742 Pfam S-locus glycoprotein domain 288 369 IPR000858 GO:0048544
Vifa2g03265 742 FunFam serine/threonine-protein kinase PBS1-like 534 641 - -
Vifa2g03265 742 PANTHER OS07G0415500 PROTEIN 162 740 - -
Vifa2g03265 742 SMART serkin_6 566 742 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g03265 742 SUPERFAMILY Protein kinase-like (PK-like) 546 740 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g03265 Vifa-Chr2 935517407 935521659 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g03265 510 740 Receptor kinase-like Gene Family AT5G20050 43.952 2.39e-55 195
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Vifa2g03265 Pkinase 1e-34 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g03265 - - tpra:123904109 1053.51