Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g03238 ATGTCTTCAACTGGTAAGGGCAAGAAGCGCGAGGAGCAGGACAACGCTTCCGATGGCGACTCTGAAGGTCACGCGCCTCCCAAAAAGACCCAAAAGAAAGATTCCGACGATGACGCTGATAACATCACCGTCTGTGAGATAGGGAAGAACAGGAAGGTTACTGTCAGGATCTGGCAGGGGAAGATTTGGGTCGACATTCGTGAGTTTTACCTCAAAGATGGCAAGGAATTGCCTGGGAAAAAAGGTATCTCTCTGTCCATGGATCAGTGGAATGTGCTTCGTGATCATATTGGAGACATTGACAAGGCTGTTGTTGAGAAGTCTTAG 327 0.4832 MSSTGKGKKREEQDNASDGDSEGHAPPKKTQKKDSDDDADNITVCEIGKNRKVTVRIWQGKIWVDIREFYLKDGKELPGKKGISLSMDQWNVLRDHIGDIDKAVVEKS 108
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g03238 108 FunFam Putative transcriptional co-activator 35 108 - -
Vifa2g03238 108 Gene3D Transcriptional Coactivator Pc4; Chain A 33 108 IPR009044 GO:0003677|GO:0006355
Vifa2g03238 108 MobiDBLite consensus disorder prediction 1 41 - -
Vifa2g03238 108 SUPERFAMILY ssDNA-binding transcriptional regulator domain 44 104 IPR009044 GO:0003677|GO:0006355
Vifa2g03238 108 Pfam Transcriptional Coactivator p15 (PC4) 45 96 IPR003173 GO:0003677|GO:0006355
Vifa2g03238 108 PANTHER RNA POLYMERASE II TRANSCRIPTIONAL COACTIVATOR 16 107 IPR045125 GO:0003713|GO:0060261
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g03238 Vifa-Chr2 928942767 928943907 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Coactivator p15 Vifa2g03238 PC4 8.9e-24 CL0609
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g03238 K25815 - gmx:100820368 159.073