Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g03233 ATGAAGTTAATCGACGACGGCGCCGGTGGCCGGAAAGTGTTGGTCGGAGTAAAATTAGATCCCCGCAGCCGCGAGTTGCTGACGTGGGCACTCGTTAAGGTCGCTGAGCCCGGTGACCTCGTCATCGCTCTTCACGTTCTCGACACCGTAACTGAGGGAACATCGTCGCTTCTGTCTCTCGTGAAGACGTTCGATTCAGTTCTCGCCGTTTACGAAGGCTTCTGCAATTTGAAGCAGGTTGATCTTAGGTTGAAAGTGTGTAGAGGTGATTCGGTTCGGAAGCTTCTAGTACAAGAGGCAAGAGCGTTTGGAGTTTCGACGAGAGAAGCTAGTGATCAAGGGAAATTACAGGAAGGTTCACATTTATCATCGAGATCGATGGTGATTTTTACTCATAAAAGTGTGAAGAATTGTGAAAGTTGTGCTCTGCGAGAGATTTCTGAAACCGAATATAATAAAGGGGAGTTGTTGCTTGATGATTGTGAAACGGAAAACCCGCTTGCTATGGTACCGTTTCAAAAGCTTGAAGATGATTCCGTGGTGGGAAATTCTAAACCGACAAAACCTGGTTGGTCACTCATTCGGAATGTGTTTCAGCATAAAAAGCATACATCGAAGTCTTCACCGAAAAATACATATGTTTTTCAACGGGCAATACGACATTCCAGCAGCCAGTCTTCAGCTGTAGTTTATCCGGATCATAAACAGATTAATATTGATCAAGTTGATGAGTCTACCCTGGATGGGGAGAGTGGTGCCATTGTGCCGTTTGGATCTGCTATTGTCTTACCTCCTCCCACTCTTTGCAGTGAGGCTGGTAGCCTTCCCGAAGAATTGTTGGTTTTACGAGAGAAGTACTCGGCTTCTTGTAGATTGTATAGTTTGCAGGAACTTGTTGCTGCAACTGTAAACTTCTCATCTGAAAATTTGGTTGGCAAAGGTGGCAGTAGTGATGTTTACAGAGGGTGTCATCCTGAAGGCAAGGAATTGGCTGTGAAAATTTTGAAGCCGTCAGAGAATGTTGTAAAAGAGTTCGCTCAAGAAGTTGAGATTGTTACAACTTTGCATCATAAGAACACAATATCTCTATCTGGTTTTTGCTTAGAGGGAAGCCATTTATTACTGGTTTATGATTTTTTATCAAGAGGAAGCCTAGAAGAAAACCTTCACGGTAACAGAATTGACTATAATTCATTTGGCTGGCAAGAGAGGTACCGAGTGGCTGTGGGTGTAGCCGAGGCCTTGGATTATCTGCATAATGGCTGTGCCCAAACTGTAATCCATAGGGATGTCAAATCTTCTAATATCCTCCTTTCAGACGATTTTGAGGCTCAGCTCTCAGATTTTGGACTGGCTAGTTGGGGTTCTTCTTCTCATATTATTTGTACTGATGTTGCCGGAACATTTGGGTACCTAGCTCCTGAATATTTTATGCACGGTAGAGTTACTGACAAAATTGATGTATATGCTTTTGGTGTTGTACTCCTTGAGCTTCTATCCAATAGGAAACCCATTAACAATGAATCTCCGAAGGGCCAGGAGAGCCTTGTTATGTGGGCAACATCAATCTTGAAAAGTGGGAAGATTTCCCAGTTGCTTGACCCAAGCCTTGGCAGTGAATACAACGATTGCCAGATCAAGAGAATGGTTTTAGCTGCTACTCTTTGTATTAGACGAGTTCCTAGATTGCGTCCTCAAATCCGAGTTATACTGAAACTTCTTCATGGCGATGAAGAAGTAACAAGATGGGCAGAACAAGAAGTTTGTGCACCGGAGACACATGATGGATTTGATGAGGAACCAGTTCGAACAAATATCCAGTCCCACCTTAACCTTGCTTTGCTGGACTTGGAGGATGATGCAGTTTCTATCAGTAGCACTGAGCAAACTGTCTCATTGGAGGACTATTTGCAAGGAAGATGGAGTCGCTGCTCAAGTTTTGACTAA 1947 0.4371 MKLIDDGAGGRKVLVGVKLDPRSRELLTWALVKVAEPGDLVIALHVLDTVTEGTSSLLSLVKTFDSVLAVYEGFCNLKQVDLRLKVCRGDSVRKLLVQEARAFGVSTREASDQGKLQEGSHLSSRSMVIFTHKSVKNCESCALREISETEYNKGELLLDDCETENPLAMVPFQKLEDDSVVGNSKPTKPGWSLIRNVFQHKKHTSKSSPKNTYVFQRAIRHSSSQSSAVVYPDHKQINIDQVDESTLDGESGAIVPFGSAIVLPPPTLCSEAGSLPEELLVLREKYSASCRLYSLQELVAATVNFSSENLVGKGGSSDVYRGCHPEGKELAVKILKPSENVVKEFAQEVEIVTTLHHKNTISLSGFCLEGSHLLLVYDFLSRGSLEENLHGNRIDYNSFGWQERYRVAVGVAEALDYLHNGCAQTVIHRDVKSSNILLSDDFEAQLSDFGLASWGSSSHIICTDVAGTFGYLAPEYFMHGRVTDKIDVYAFGVVLLELLSNRKPINNESPKGQESLVMWATSILKSGKISQLLDPSLGSEYNDCQIKRMVLAATLCIRRVPRLRPQIRVILKLLHGDEEVTRWAEQEVCAPETHDGFDEEPVRTNIQSHLNLALLDLEDDAVSISSTEQTVSLEDYLQGRWSRCSSFD 648
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g03233 648 Gene3D Transferase(Phosphotransferase) domain 1 380 591 - -
Vifa2g03233 648 FunFam Putative receptor-like serine/threonine-protein kinase 380 590 - -
Vifa2g03233 648 PANTHER OS08G0249100 PROTEIN 65 610 IPR046958 -
Vifa2g03233 648 Pfam Protein kinase domain 307 518 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g03233 648 CDD USP_Like 12 106 - -
Vifa2g03233 648 ProSiteProfiles Protein kinase domain profile. 305 597 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g03233 648 ProSitePatterns Protein kinases ATP-binding region signature. 311 333 IPR017441 GO:0005524
Vifa2g03233 648 Gene3D Phosphorylase Kinase; domain 1 276 379 - -
Vifa2g03233 648 SUPERFAMILY Protein kinase-like (PK-like) 286 574 IPR011009 -
Vifa2g03233 648 ProSitePatterns Serine/Threonine protein kinases active-site signature. 426 438 IPR008271 GO:0004672|GO:0006468
Vifa2g03233 648 SMART serkin_6 305 574 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g03233 648 FunFam probable receptor-like serine/threonine-protein kinase At5g57670 274 379 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g03233 Vifa-Chr2 927173444 927176460 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g03233 292 567 Trihelix Transcription Factor Family AT1G68690 44.523 3.77e-72 244
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Vifa2g03233 Pkinase 4e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g03233 - - gmx:100815722 1002.28