Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g03232 ATGAAGTTAATCGACGACGGCGCCGGTGGCCGGAAAGTGTTGGTCGGAGTAAAATTAGATCCCCGCAGCCGCGAGTTGCTGACGTGGGCACTCGTTAAGGTCGCTGAGCCCGGTGACCTCGTCATCGCTCTTCACGTTCTCGACACCGTAACTGAGGGAACATCGTCGCTTCTGTCTCTCGTGAAGACGTTCGATTCAGTTCTCGCCGTTTACGAAGGCTTCTGCAATTTGAAGCAGGTTGATCTTAGGTTGAAAGTGTGTAGAGGTGATTCGGTTCGGAAGCTTCTAGTACAAGAGGCAAGAGCGTTTGGAGTTTCGACGGTGATTCTAGGAACTTCGAAATCTCATCATACTATCCGTTCGTCTTCGTGGGTTGCTAAGTATTGTGCGAAGAAATTGCATAAGTGTGTTTCTGTTTTCGCTGTTGATAATGGAAAAATTGCTTTTCACAGAGAAGCTAGTGATCAAGGGAAATTACAGGAAGGTTCACATTTATCATCGAGATCGATGGTGATTTTTACTCATAAAAGTGTGAAGAATTGTGAAAGTTGTGCTCTGCGAGAGATTTCTGAAACCGAATATAATAAAGGGGAGTTGTTGCTTGATGATTGTGAAACGGAAAACCCGCTTGCTATGGTACCGTTTCAAAAGCTTGAAGATGATTCCGTGGTGGGAAATTCTAAACCGACAAAACCTGGTTGGTCACTCATTCGGAATGTGTTTCAGCATAAAAAGCATACATCGAAGTCTTCACCGAAAAATACATATGTTTTTCAACGGGCAATACGACATTCCAGCAGCCAGTCTTCAGCTGTAGTTTATCCGGATCATAAACAGATTAATATTGATCAAGTTGATGAGTCTACCCTGGATGGGGAGAGTGGTGCCATTGTGCCGTTTGGATCTGCTATTGTCTTACCTCCTCCCACTCTTTGCAGTGAGGCTGGTAGCCTTCCCGAAGAATTGTTGGTTTTACGAGAGAAGTACTCGGCTTCTTGTAGATTGTATAGTTTGCAGGAACTTGTTGCTGCAACTGTAAACTTCTCATCTGAAAATTTGGTTGGCAAAGGTGGCAGTAGTGATGTTTACAGAGGGTGTCATCCTGAAGGCAAGGAATTGGCTGTGAAAATTTTGAAGCCGTCAGAGAATGTTGTAAAAGAGTTCGCTCAAGAAGTTGAGATTGTTACAACTTTGCATCATAAGAACACAATATCTCTATCTGGTTTTTGCTTAGAGGGAAGCCATTTATTACTGGTTTATGATTTTTTATCAAGAGGAAGCCTAGAAGAAAACCTTCACGGTAACAGAATTGACTATAATTCATTTGGCTGGCAAGAGAGGTACCGAGTGGCTGTGGGTGTAGCCGAGGCCTTGGATTATCTGCATAATGGCTGTGCCCAAACTGTAATCCATAGGGATGTCAAATCTTCTAATATCCTCCTTTCAGACGATTTTGAGGCTCAGCTCTCAGATTTTGGACTGGCTAGTTGGGGTTCTTCTTCTCATATTATTTGTACTGATGTTGCCGGAACATTTGGGTACCTAGCTCCTGAATATTTTATGCACGGTAGAGTTACTGACAAAATTGATGTATATGCTTTTGGTGTTGTACTCCTTGAGCTTCTATCCAATAGGAAACCCATTAACAATGAATCTCCGAAGGGCCAGGAGAGCCTTGTTATGTGGGCAACATCAATCTTGAAAAGTGGGAAGATTTCCCAGTTGCTTGACCCAAGCCTTGGCAGTGAATACAACGATTGCCAGATCAAGAGAATGGTTTTAGCTGCTACTCTTTGTATTAGACGAGTTCCTAGATTGCGTCCTCAAATCCGAGTTATACTGAAACTTCTTCATGGCGATGAAGAAGTAACAAGATGGGCAGAACAAGAAGTTTGTGCACCGGAGACACATGATGGATTTGATGAGGAACCAGTTCGAACAAATATCCAGTCCCACCTTAACCTTGCTTTGCTGGACTTGGAGGATGATGCAGTTTCTATCAGTAGCACTGAGCAAACTGTCTCATTGGAGGACTATTTGCAAGGAAGATGGAGTCGCTGCTCAAGTTTTGACTAA 2076 0.4335 MKLIDDGAGGRKVLVGVKLDPRSRELLTWALVKVAEPGDLVIALHVLDTVTEGTSSLLSLVKTFDSVLAVYEGFCNLKQVDLRLKVCRGDSVRKLLVQEARAFGVSTVILGTSKSHHTIRSSSWVAKYCAKKLHKCVSVFAVDNGKIAFHREASDQGKLQEGSHLSSRSMVIFTHKSVKNCESCALREISETEYNKGELLLDDCETENPLAMVPFQKLEDDSVVGNSKPTKPGWSLIRNVFQHKKHTSKSSPKNTYVFQRAIRHSSSQSSAVVYPDHKQINIDQVDESTLDGESGAIVPFGSAIVLPPPTLCSEAGSLPEELLVLREKYSASCRLYSLQELVAATVNFSSENLVGKGGSSDVYRGCHPEGKELAVKILKPSENVVKEFAQEVEIVTTLHHKNTISLSGFCLEGSHLLLVYDFLSRGSLEENLHGNRIDYNSFGWQERYRVAVGVAEALDYLHNGCAQTVIHRDVKSSNILLSDDFEAQLSDFGLASWGSSSHIICTDVAGTFGYLAPEYFMHGRVTDKIDVYAFGVVLLELLSNRKPINNESPKGQESLVMWATSILKSGKISQLLDPSLGSEYNDCQIKRMVLAATLCIRRVPRLRPQIRVILKLLHGDEEVTRWAEQEVCAPETHDGFDEEPVRTNIQSHLNLALLDLEDDAVSISSTEQTVSLEDYLQGRWSRCSSFD 691
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g03232 691 FunFam probable receptor-like serine/threonine-protein kinase At5g57670 10 143 - -
Vifa2g03232 691 Gene3D HUPs 10 143 IPR014729 -
Vifa2g03232 691 Gene3D Phosphorylase Kinase; domain 1 319 422 - -
Vifa2g03232 691 FunFam probable receptor-like serine/threonine-protein kinase At5g57670 317 422 - -
Vifa2g03232 691 ProSitePatterns Protein kinases ATP-binding region signature. 354 376 IPR017441 GO:0005524
Vifa2g03232 691 CDD USP_Like 12 137 - -
Vifa2g03232 691 SUPERFAMILY Protein kinase-like (PK-like) 329 617 IPR011009 -
Vifa2g03232 691 Pfam Universal stress protein family 11 136 IPR006016 -
Vifa2g03232 691 Pfam Protein kinase domain 350 561 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g03232 691 ProSiteProfiles Protein kinase domain profile. 348 640 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g03232 691 ProSitePatterns Serine/Threonine protein kinases active-site signature. 469 481 IPR008271 GO:0004672|GO:0006468
Vifa2g03232 691 Gene3D Transferase(Phosphotransferase) domain 1 423 634 - -
Vifa2g03232 691 SMART serkin_6 348 617 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g03232 691 PANTHER OS08G0249100 PROTEIN 120 653 IPR046958 -
Vifa2g03232 691 FunFam Putative receptor-like serine/threonine-protein kinase 423 633 - -
Vifa2g03232 691 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 11 116 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g03232 Vifa-Chr2 927173444 927176460 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g03232 335 610 Trihelix Transcription Factor Family AT1G68690 44.523 8.86e-72 244
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Vifa2g03232 Pkinase 4.5e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g03232 - - gmx:100815722 1101.66