Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g03227 ATGACTACAGGATCATCGGTCTACTCTACCTCAATTCACCATTTCGAACTTTATACAGAAGGTTTTTCTGTACCAGCTCCTTATACATATACCTCAGTTGAAGCACCTAAAGAAGAATTTGGTGTCTTTCTGGTCAGTAATCGAAGCAATCGTCCCTACCATCGTAAAATAAGAGCACCTGGCTCTGCCCATTCACAAGGACTCGATTCTATGTCCAAACATCACATGCCAGCAGATGTGGTCACCATCATAGTGGATGAGATCGGTCGAGTGGTCTCAGTTGGAGATGGGATTGCACGTGTTTATGGATTGAACGAGATTCAAGTTGGGGAATTGGTTGAATTTGCCAGCGGTGTGAAAGGAATAGCGTTGAATCTTGAGAATGAGAATGTCGGAATTGTTGTCTTTGGTAGTGATACCTCTATCAAAGAAGGAGATCTTTTCAAACGTACTGGATCTATTGTGGATGTTCCTGCGGGAAAGGCTATGCTAGGGCGTGTGGTCGACGTGTTGGGAGTACCTATTGATGGAAGAGGGGCTCTAAGCGATCACGAGCGAAGACATGTCGAAGTGAAAGCCCCTGGGATTATAGAACGTAAATCAGTGCACGAGCCTATGCAAACTGGGTTAAAAGCGGTAGATAGCCTGGTTCCTATAGGCTGTGGTCAACGAGAACTTATAATCGGGGACCGGCAAACGGGAAAAACAGCTATAGCTATCGATACCATATTAAACCAAAAGCAAATGAACTCAAGGGCCACCTCTGAGAGTGAGACATTGTATTGTGTCTATGTAGCGATTGGACAGAAACGCTCAACTGTGGCACAATTAGTTCAAATTCTTTCAGAAGCGAATGCTTTAGAATATTCCATTCTTGTAGCAGCCACCACTTCGGATCTAACACCTCTGCAATTTCTGGCCCCATATTCTGGGTGTGCCATGGGGGAATATTTCCGCGATAATGGAATGCACGCATTAATAATCTATGATGATCTTAGTAAACAGGCCGTGGCATATCGACAAATGTCATTATTGTTACGCCGACCACCAGGCCGTGAGGCTTTCCCAGGCGATGTTTTCGATTTACATTCCCGTCTCTTAGAAAGAGTCGCAAAACGGTCGGACCAGACAGGCGCAGGTAGCTTGACCGCCTTACCCGTCATTGAAACACAAGCTGGAGACGTATCGGCCTATATTCCTACCAATGTTATCTCCATTACGGATGGACAAATCTGTTTGGAAACAGAGCTCTTTTATCGCGGAATTAGACCTGCTATTAACGTCGGCTTATATGTCAGTCGCGTCGGGTATGCCGCTCAGTTGAAAGCTATGAAACAAGTCTGCGGTAGTTTAAAACTGGAATTGCCACAATATCGCGAAGTGGCCGCCTTTGCTCAAAAAATCCCACTGATATTCCTCGTAGGAATACTTTTGGGGGAAATATATATATTAAATTCCTTGCTTTCTAAAGCATTAACCGCCGCGGGTGCCCGTGCCCTTTTTTCTTTTTTAGTAAAAAAGGGGTTACCCGGAAGGCTCGCCCAGGCCCTTGGATTCATATTAAAAATACTTTTTTCCGACACGGATACTGGATTTTTTAATATGATGCCATCGGGTTCGGGTGAGGGAGGACGAAGCTTCAGGTGGACTGACTTGTTTGGAAGCTTTTCAAGTTGTAATTCCGAAGCCAGTGTCAACCAACCGGCCCGGGACTATGCCAACCCTGGTGAACCCGACGCGCCTCTTTATCACCCGTTACAGGAGGACGGACAGAGGCGCCAAGAACTCTCTGATCGTCTTGGTATCAACAGTATAGGAAGTGATATGCCCGACGATGTTTGGGAGTCAATTCTCAAAACTCACAATTCGATAGAACTGAAGATCGAGAAAGCCCTTCGTTCAGACAGGTTTTCCGAGGATTCCCTTATGGAGAAAAGGCATCAGATAAGGGGGGTCCTCTTTTACCCTAATGGGAAGGCTTTATCATTTCGGACTTATAATCAACACCTCCATTACATGGAGAACTTTGGAACCCACCGTAGCATCCCTTATAAGAGGGTTATAAAAGCTTTATATAATCAAGACCTGGAACTTGAAAAGATTTAA 2106 0.4506 MTTGSSVYSTSIHHFELYTEGFSVPAPYTYTSVEAPKEEFGVFLVSNRSNRPYHRKIRAPGSAHSQGLDSMSKHHMPADVVTIIVDEIGRVVSVGDGIARVYGLNEIQVGELVEFASGVKGIALNLENENVGIVVFGSDTSIKEGDLFKRTGSIVDVPAGKAMLGRVVDVLGVPIDGRGALSDHERRHVEVKAPGIIERKSVHEPMQTGLKAVDSLVPIGCGQRELIIGDRQTGKTAIAIDTILNQKQMNSRATSESETLYCVYVAIGQKRSTVAQLVQILSEANALEYSILVAATTSDLTPLQFLAPYSGCAMGEYFRDNGMHALIIYDDLSKQAVAYRQMSLLLRRPPGREAFPGDVFDLHSRLLERVAKRSDQTGAGSLTALPVIETQAGDVSAYIPTNVISITDGQICLETELFYRGIRPAINVGLYVSRVGYAAQLKAMKQVCGSLKLELPQYREVAAFAQKIPLIFLVGILLGEIYILNSLLSKALTAAGARALFSFLVKKGLPGRLAQALGFILKILFSDTDTGFFNMMPSGSGEGGRSFRWTDLFGSFSSCNSEASVNQPARDYANPGEPDAPLYHPLQEDGQRRQELSDRLGINSIGSDMPDDVWESILKTHNSIELKIEKALRSDRFSEDSLMEKRHQIRGVLFYPNGKALSFRTYNQHLHYMENFGTHRSIPYKRVIKALYNQDLELEKI 701
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g03227 701 FunFam ATP synthase subunit alpha, mitochondrial 154 440 - -
Vifa2g03227 701 Gene3D - 2 87 IPR029014 -
Vifa2g03227 701 Pfam Respiratory-chain NADH dehydrogenase, 49 Kd subunit 8 84 IPR001135 GO:0016651|GO:0048038|GO:0051287
Vifa2g03227 701 SUPERFAMILY C-terminal domain of alpha and beta subunits of F1 ATP synthase 442 466 - -
Vifa2g03227 701 Pfam ATP synthase alpha/beta family, beta-barrel domain 84 152 IPR004100 GO:0046034|GO:1902600
Vifa2g03227 701 NCBIfam F0F1 ATP synthase subunit alpha 82 466 IPR005294 GO:0015986|GO:0045261|GO:0046933
Vifa2g03227 701 CDD ATP-synt_F1_alpha_N 87 152 - -
Vifa2g03227 701 Gene3D - 441 467 IPR038376 -
Vifa2g03227 701 Pfam ATP synthase alpha/beta chain, C terminal domain 440 466 IPR000793 GO:0015986
Vifa2g03227 701 PANTHER ATP SYNTHASE SUBUNIT ALPHA, MITOCHONDRIAL 79 466 IPR005294 GO:0015986|GO:0045261|GO:0046933
Vifa2g03227 701 CDD F1-ATPase_alpha_CD 154 436 IPR033732 GO:0032559
Vifa2g03227 701 Gene3D - 155 440 IPR027417 -
Vifa2g03227 701 SUPERFAMILY N-terminal domain of alpha and beta subunits of F1 ATP synthase 83 154 IPR036121 GO:0046034|GO:1902600
Vifa2g03227 701 Gene3D - 88 154 IPR023366 -
Vifa2g03227 701 SUPERFAMILY HydB/Nqo4-like 10 84 IPR029014 -
Vifa2g03227 701 MobiDBLite consensus disorder prediction 566 585 - -
Vifa2g03227 701 Pfam ATP synthase alpha/beta family, nucleotide-binding domain 209 432 IPR000194 GO:0005524
Vifa2g03227 701 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 156 437 IPR027417 -
Vifa2g03227 701 Hamap ATP synthase subunit alpha [atpA]. 61 573 IPR005294 GO:0015986|GO:0045261|GO:0046933
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g03227 Vifa-Chr2 926309901 926312227 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g03227 120 439 Primary Pumps ATPases(2) AT4G38510 24.924 3.77e-20 92.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g03227 K02132 - gmx:15308543 703.745