Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g03210 ATGATGTTTAGTGCAAAACTAAGGCTAAATCTTCCTCAAGAAAAACTATGCTCCAAGGTTAAGTCACTGATTCAAGAGCTTGGTCTTAGCCATCTTGCTAGGACTAGAGTAGGAGACGGAGATGACAGAATCCGCGGAATATCCGGTGGTGAGAGGCGCCGAGTTTCCATTGGTGTTGAAGTCATACATGATCCGAAAGTGTTGATTCTTGATGAAGCAACTTCGGGTCTTGACAGTACCTCGGCTTTGCAAATAATTGATATGCTGAAAGCCATGGCTGAATCTAGGGGAAGAACTATAATACTAAGTATTCATCAACCCGGGTTCAGGATAGTGAAGTTGTTCAATTCAATACTGTTGTTAGACAATGGCAGTGTGTTGCATCATGGGAGTGTGGATTTGTTGGATGTGAATCTGAGGTTGATGGGTTTAGAGCTTCCTCTTCATGTTAATGTCGTTGAGTTTGCTATTGAATCCATTGAGACTATTCAGCAACAACAAAAAAGTCAACAAGTTAAGATCGAACAAGTTCAGATTGAAGCGCCGAAACGAGTACTCGGGTCAATGATACTAAAGAAAGGCGATGATCAAGGTGAAAGTAGAAGTGGTAAGTTAACTCTACTACAACTATTTCAACAATCCAAGGTATTTGACATTGAAACCATCAATGTAGGCATGGATTTTACATGTGATTATGCTAATTCTAGATTGAGAGAAACAATGATTCTTGCTCATAGGTTCTCCAAAAACATTCTTCGTACAAATGAGCTTTTTGCATTTAAGACAGTTCAGATGCTGATTTCTGGTATGGTTTTAGGCTCCATATTTGGTAATCTCAAAGATGGTTTAGTGGGAGCAGAACAGAGAGTTGGTTTATTTGCTTTCATACTAACGTTTTTGTTATCAAGCACCATTGATGCTCTACCGATTTTTCTGCAAGAACGGGAGATTCTAACGAAGGAGACCTCAAGTGGAAGCTACAGAGTTTCATCCTATGCTTTAGCCAATGGCCTAGTTTACTTGCCATTTCTACTCATACTAGCCATTCTATTCGCAGTGCCGCTGTACTGGATTGTCGGTCTCAACCAAAATTTCACGGCGTTTTTGAACTTTCTGTTGCTAATATGGCTGATACTGTACACTGCAAATTCGGTTGTGGTATGTTTCAGTGCTCTGGTGCCTAATTTCATTGTTGGAAATTCGGTAATCGCCGGGGTCATTGGTTCGTCTTTTTTGTTTTCTGGTTACTTCATATCCAATCATCAAATTCCAAAGTACTGGATTTTCATGCATTATTTATCTCTATTTAAGTATCCCTTTGAAGGGTTTCTGATAAATGAGTTCTCCAACTCAAAGAAATGCTTAGAGTATATGTTTGGGGCATGTGTGATGAAGGGAGAGGATATACTTAAAGAAGAAGGGTATGGAGGAGAGAGTAGTAGATGGAAGAATGTTGGGGTGATGCTGTCCTTTATCTTTGTTTATAGATTCATTTCTTATGTAATTCTCAGATACCGATGTTCCCGGAGTGTCATCTTCTGA 1542 0.3956 MMFSAKLRLNLPQEKLCSKVKSLIQELGLSHLARTRVGDGDDRIRGISGGERRRVSIGVEVIHDPKVLILDEATSGLDSTSALQIIDMLKAMAESRGRTIILSIHQPGFRIVKLFNSILLLDNGSVLHHGSVDLLDVNLRLMGLELPLHVNVVEFAIESIETIQQQQKSQQVKIEQVQIEAPKRVLGSMILKKGDDQGESRSGKLTLLQLFQQSKVFDIETINVGMDFTCDYANSRLRETMILAHRFSKNILRTNELFAFKTVQMLISGMVLGSIFGNLKDGLVGAEQRVGLFAFILTFLLSSTIDALPIFLQEREILTKETSSGSYRVSSYALANGLVYLPFLLILAILFAVPLYWIVGLNQNFTAFLNFLLLIWLILYTANSVVVCFSALVPNFIVGNSVIAGVIGSSFLFSGYFISNHQIPKYWIFMHYLSLFKYPFEGFLINEFSNSKKCLEYMFGACVMKGEDILKEEGYGGESSRWKNVGVMLSFIFVYRFISYVILRYRCSRSVIF 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g03210 513 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 39 134 IPR027417 -
Vifa2g03210 513 Pfam ABC-2 type transporter 240 448 IPR013525 GO:0016020|GO:0140359
Vifa2g03210 513 Coils Coil 160 180 - -
Vifa2g03210 513 Pfam ABC transporter 19 75 IPR003439 GO:0005524
Vifa2g03210 513 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 1 498 - -
Vifa2g03210 513 Pfam ABC-2 type transporter 105 178 IPR043926 GO:0140359
Vifa2g03210 513 Gene3D - 1 187 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g03210 Vifa-Chr2 921774694 921776235 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g03210 34 153 Calmodulin-binding Proteins AT2G36910 28.906 8.85e-07 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g03210 K05681 - gmx:121172640 754.977