Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g03209 ATGAAGAAACAATGGTGTGAGATTGAGGCAATAGGCATTAACTATAAGATCCATGGCACAAAGACATTAAAACAACCTTTTAAAATCTTCAACAAACCTCGAAAACCAGACTATGAAGCAAATGCTGGAGAAATGCCGGGTAGTGGAGCTAAGCATGTTCTCAAGGATGTTAATTGCATAGCCAAGCCATGTGAAATTCTTGCGATTGTTGGGCCAAGTGGAGCAGGAAAATCATCACTGCTTGAGATTCTTGCTGGTAGAGTTAGTCCAGAAAATGGAGGTTCTATCTTGGTGAACAAGGAGCATGTAGATAAATCTCAGTTCAGAAAAATTTCAGGGTATGTTACACAAAAGGATACCCTTTTCCCCTTACTTACAGTGGAAGAAACCATGATGTTTAGTGCAAAACTAAGGCTAAATCTTCCTCAAGAAAAACTATGCTCCAAGGTTAAGTCACTGATTCAAGAGCTTGGTCTTAGCCATCTTGCTAGGACTAGAGTAGGAGACGGAGATGACAGAATCCGCGGAATATCCGGTGGTGAGAGGCGCCGAGTTTCCATTGGTGTTGAAGTCATACATGATCCGAAAGTGTTGATTCTTGATGAAGCAACTTCGGGTCTTGACAGTACCTCGGCTTTGCAAATAATTGATATGCTGAAAGCCATGGCTGAATCTAGGGGAAGAACTATAATACTAAGTATTCATCAACCCGGGTTCAGGATAGTGAAGTTGTTCAATTCAATACTGTTGTTAGACAATGGCAGTGTGTTGCATCATGGGAGTGTGGATTTGTTGGATGTGAATCTGAGGTTGATGGGTTTAGAGCTTCCTCTTCATGTTAATGTCGTTGAGTTTGCTATTGAATCCATTGAGACTATTCAGCAACAACAAAAAAGTCAACAAGTTAAGATCGAACAAGTTCAGATTGAAGCGCCGAAACGAGTACTCGGGTCAATGATACTAAAGAAAGGCGATGATCAAGGTGAAAGTAGAAGTGGTAAGTTAACTCTACTACAACTATTTCAACAATCCAAGGTATTTGACATTGAAACCATCAATGTAGGCATGGATTTTACATGTGATTATGCTAATTCTAGATTGAGAGAAACAATGATTCTTGCTCATAGGTTCTCCAAAAACATTCTTCGTACAAATGAGCTTTTTGCATTTAAGACAGTTCAGATGCTGATTTCTGGTATGGTTTTAGGCTCCATATTTGGTAATCTCAAAGATGGTTTAGTGGGAGCAGAACAGAGAGTTGGTTTATTTGCTTTCATACTAACGTTTTTGTTATCAAGCACCATTGATGCTCTACCGATTTTTCTGCAAGAACGGGAGATTCTAACGAAGGAGACCTCAAGTGGAAGCTACAGAGTTTCATCCTATGCTTTAGCCAATGGCCTAGTTTACTTGCCATTTCTACTCATACTAGCCATTCTATTCGCAGTGCCGCTGTACTGGATTGTCGGTCTCAACCAAAATTTCACGGCGTTTTTGAACTTTCTGTTGCTAATATGGCTGATACTGTACACTGCAAATTCGGTTGTGGTATGTTTCAGTGCTCTGGTGCCTAATTTCATTGTTGGAAATTCGGTAATCGCCGGGGTCATTGGTTCGTCTTTTTTGTTTTCTGGTTACTTCATATCCAATCATCAAATTCCAAAGTACTGGATTTTCATGCATTATTTATCTCTATTTAAGTATCCCTTTGAAGGGTTTCTGATAAATGAGTTCTCCAACTCAAAGAAATGCTTAGAGTATATGTTTGGGGCATGTGTGATGAAGGGAGAGGATATACTTAAAGAAGAAGGGTATGGAGGAGAGAGTAGTAGATGGAAGAATGTTGGGGTGATGCTGTCCTTTATCTTTGTTTATAGATTCATTTCTTATGTAATTCTCAGATACCGATGTTCCCGGAGTGTCATCTTCTGA 1932 0.3965 MKKQWCEIEAIGINYKIHGTKTLKQPFKIFNKPRKPDYEANAGEMPGSGAKHVLKDVNCIAKPCEILAIVGPSGAGKSSLLEILAGRVSPENGGSILVNKEHVDKSQFRKISGYVTQKDTLFPLLTVEETMMFSAKLRLNLPQEKLCSKVKSLIQELGLSHLARTRVGDGDDRIRGISGGERRRVSIGVEVIHDPKVLILDEATSGLDSTSALQIIDMLKAMAESRGRTIILSIHQPGFRIVKLFNSILLLDNGSVLHHGSVDLLDVNLRLMGLELPLHVNVVEFAIESIETIQQQQKSQQVKIEQVQIEAPKRVLGSMILKKGDDQGESRSGKLTLLQLFQQSKVFDIETINVGMDFTCDYANSRLRETMILAHRFSKNILRTNELFAFKTVQMLISGMVLGSIFGNLKDGLVGAEQRVGLFAFILTFLLSSTIDALPIFLQEREILTKETSSGSYRVSSYALANGLVYLPFLLILAILFAVPLYWIVGLNQNFTAFLNFLLLIWLILYTANSVVVCFSALVPNFIVGNSVIAGVIGSSFLFSGYFISNHQIPKYWIFMHYLSLFKYPFEGFLINEFSNSKKCLEYMFGACVMKGEDILKEEGYGGESSRWKNVGVMLSFIFVYRFISYVILRYRCSRSVIF 643
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g03209 643 ProSitePatterns ABC transporters family signature. 177 191 IPR017871 GO:0005524|GO:0016887
Vifa2g03209 643 Coils Coil 290 310 - -
Vifa2g03209 643 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 13 628 - -
Vifa2g03209 643 Pfam ABC-2 type transporter 370 578 IPR013525 GO:0016020|GO:0140359
Vifa2g03209 643 Pfam ABC-2 type transporter 235 308 IPR043926 GO:0140359
Vifa2g03209 643 Gene3D - 44 317 IPR027417 -
Vifa2g03209 643 SMART AAA_5 63 255 IPR003593 GO:0016887
Vifa2g03209 643 Pfam ABC transporter 54 205 IPR003439 GO:0005524
Vifa2g03209 643 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 49 264 IPR027417 -
Vifa2g03209 643 FunFam ABC transporter G family member 5 39 302 - -
Vifa2g03209 643 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 33 278 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g03209 Vifa-Chr2 921774304 921776235 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g03209 30 283 Calmodulin-binding Proteins AT2G36910 23.897 9.80e-16 79.3