Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g03208 ATGGGAGATATTGTCAAACTTCCTCCTGGGTTTGTTTTCTCTCCAACAGATGAAGAACTTATCCTTCACTTTCTATATTCTAAGGCTTCTGATCTTATACCATCCCACTCAAATTTCATCCCTTATCTTGATCTCTCTCTACTTCTTCCTTGGGAATTAAATGGTATGGCTATGTGTGGTGGAAATGATGATGACCAATACTATTTCTTCACCAAACTGAACAAGGAAAACAGATCCACTCAAAATGGTTTTTGGAAGGAAATTGGTGTGACAGAACCAATATTTTCAGGTACAGATCAAAAAGTGGGAATGAAGAAGTACCTAGTATTCAATGAAACTAGTTGGGTAATGCAAGAATATCACATTTGCTCCTCTGTGTTTGATAAAGTTGGTGAAAATTGGAGCGAGTGGGTATTATGCAAAGTGTATCATGAACAAGGTGTGAATTGCTGTTACAGCGATGATGATCGTGAGAGTAGTGGAACAGAACTTTCATGGCAAGACCAAGTTTTTCTGTCTTTGGACTTGGACATTGACATGGAAGGAATAACCATGAATCAATATTAG 567 0.3774 MGDIVKLPPGFVFSPTDEELILHFLYSKASDLIPSHSNFIPYLDLSLLLPWELNGMAMCGGNDDDQYYFFTKLNKENRSTQNGFWKEIGVTEPIFSGTDQKVGMKKYLVFNETSWVMQEYHICSSVFDKVGENWSEWVLCKVYHEQGVNCCYSDDDRESSGTELSWQDQVFLSLDLDIDMEGITMNQY 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g03208 188 Pfam No apical meristem (NAM) protein 8 122 IPR003441 GO:0003677|GO:0006355
Vifa2g03208 188 Gene3D NAC domain 16 148 IPR036093 GO:0003677|GO:0006355
Vifa2g03208 188 SUPERFAMILY NAC domain 4 145 IPR036093 GO:0003677|GO:0006355
Vifa2g03208 188 PANTHER NAC TRANSCRIPTION FACTOR 56 7 148 - -
Vifa2g03208 188 ProSiteProfiles NAC domain profile. 7 145 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g03208 Vifa-Chr2 921194219 921195443 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g03208 1 149 NAC Transcription Factor Family AT1G01720 36.257 2.90e-27 102
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vifa2g03208 NAM 3.1e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g03208 - - gmx:100170711 222.246
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g03208 2 921194219 921195443 Vifa2g03208 2 921194219 921195443 ECH