Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g03207 ATGAACTTCATAGATTCCACATGTGTCATTAAGAATGAAGATCTTGAAGAGCTAAAGGAACTGGGTTCTGGTACATTTGGGACTGTTTATCATGGAAAATGGAGAGGAACAGATGTTGCTATCAAAAGAATAAAGAAGAGTTGCTTCACTGGTCGATCATCTGAGCAAGAGAGACTGACTGCAGAGTTCTGGCGAGAAGCTGACATTCTTTCAAAGCTTCATCATCCAAATGTGGTTGCATTTTACGGTGTGGTACAGGATGGACCGGGAGGAACAGTGGCTACTGTTACAGAATTCATGGTGGATGGTTCTCTTAGGCATGTATTACTTCGAAAGGATAGGTGTCTTGATCGTCGCAAAAGGCTGATAATTGCAATGGATGCAGCTTTTGGAATGGAATATTTACACTCAAAAAACATTGTGCATTTCGACTTAAAATGCGACAATTTGCTTGTAAACTTGAAAGATCCTTTGCGGCCAATATGCAAGGTTGGTGATTTTGGCTTGTCAAAAATTAAACGAAATACCTTGGTTACTGGTGGCGTGCGGGGCACTCTACCTTGGATGGCGCCAGAGCTGCTGAATGGAAGCAGCAGCAAGGTCTCAGAAAAGGTTGACGTGTTCTCCTTTGGCATAGTTTTATGGGAAATTTTAACTGGTGAGGAGCCATATGCCAATATGCACTATGGTGCAATTATAGGTGGGATTGTAAATAACACATTGAGGCCAACCATTCCAAGCCACTGTGATCTCGAATGGAGAACACTGATGGAACAATGTTGGGCGCCGAATCCTGTGGTCAGGCCTTCTTTCACAGAAATTGCAAGTCGGTTGCGCATAATGTCCGCAGACGGCCAGGGAAACAAACCATCTAAATGA 879 0.4334 MNFIDSTCVIKNEDLEELKELGSGTFGTVYHGKWRGTDVAIKRIKKSCFTGRSSEQERLTAEFWREADILSKLHHPNVVAFYGVVQDGPGGTVATVTEFMVDGSLRHVLLRKDRCLDRRKRLIIAMDAAFGMEYLHSKNIVHFDLKCDNLLVNLKDPLRPICKVGDFGLSKIKRNTLVTGGVRGTLPWMAPELLNGSSSKVSEKVDVFSFGIVLWEILTGEEPYANMHYGAIIGGIVNNTLRPTIPSHCDLEWRTLMEQCWAPNPVVRPSFTEIASRLRIMSADGQGNKPSK 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g03207 292 Gene3D Phosphorylase Kinase; domain 1 8 102 - -
Vifa2g03207 292 ProSiteProfiles Protein kinase domain profile. 15 280 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g03207 292 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 103 292 - -
Vifa2g03207 292 PRINTS Tyrosine kinase catalytic domain signature 97 110 IPR001245 GO:0004672|GO:0006468
Vifa2g03207 292 PRINTS Tyrosine kinase catalytic domain signature 205 227 IPR001245 GO:0004672|GO:0006468
Vifa2g03207 292 PRINTS Tyrosine kinase catalytic domain signature 134 152 IPR001245 GO:0004672|GO:0006468
Vifa2g03207 292 PRINTS Tyrosine kinase catalytic domain signature 249 271 IPR001245 GO:0004672|GO:0006468
Vifa2g03207 292 PIRSF ILK 2 289 - -
Vifa2g03207 292 ProSitePatterns Protein kinases ATP-binding region signature. 21 46 IPR017441 GO:0005524
Vifa2g03207 292 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 8 102 - -
Vifa2g03207 292 PANTHER SERINE-THREONINE PROTEIN KINASE 11 279 - -
Vifa2g03207 292 ProSitePatterns Serine/Threonine protein kinases active-site signature. 140 152 IPR008271 GO:0004672|GO:0006468
Vifa2g03207 292 Gene3D Transferase(Phosphotransferase) domain 1 103 290 - -
Vifa2g03207 292 Pfam Protein tyrosine and serine/threonine kinase 16 278 IPR001245 GO:0004672|GO:0006468
Vifa2g03207 292 SMART serkin_6 15 281 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g03207 292 SUPERFAMILY Protein kinase-like (PK-like) 5 278 IPR011009 -
Vifa2g03207 292 CDD STKc_MAP3K-like 21 278 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g03207 Vifa-Chr2 920566121 920568769 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g03207 9 289 MAP Kinase Kinase Kinase AT1G16270 88.612 0.0 537
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-6 Vifa2g03207 PK_Tyr_Ser-Thr 2.1e-63 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g03207 - - tpra:123895538 544.658