Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g03197 ATGAATCTCTCTTCTCTGAGTTTTACCGCTCAGCATCTTGTTGCTCCTATATATTCTACACTTCCCAGTGCTGCTATTAGGGGCAAAAGTGCGGATAGTGTTGCAATTGAAGGTTGTAATCTGAATTTTTCATTCACCGCGAGGCAAACAAAGGATGTACAGGCTCTTAGAGATTGCTCTCTTCGCATTCCTTCTGGGCAGTTTTGGATGCTTCTTGGACCTAATGGGTGTGGAAAATCAACACTCTTGAAGATTTTGGCTGGTCTATTGACTCCATCTTCAGGAACAGTATATGTGAAAGAACCTAAAAGTTTTGTTTTCCAAAATCCGGATCATCAGGTGGTGATGCCTACAGTCGATTCTGATGTTGCATTTGGTCTTGGTAAAATCAATTTGGCCAATGATGAAGTGAGATCTAGGGTGTCCCAAGCTTTACATGCCGTCGGTTTAGCTGACTACATGAAGAGATCTGTCCAAACTCTGAGTGGTGGCCAGAAGCAGAGGGTTGCCATTGCTGGTGCTCTTGCAGAAGCTTGTAAGGTTCTGTTGTTGGATGAGCTCACAACATTCCTAGATGAAACTGACCAGGTTGGTGTTATCAAAGCTGTTAGAAACTGTCTGGATACTTCTGAAGAAGTTACAGCATTATGGGTCACCCATCGTTTGGAAGAACTCGAGTATGCAGATGGTGCAATCTACATGGAAGATGGAAAGGTAGTCATGCATGGAGATGTGACAAGCATAAGGCGTTTCATCAAAGCCAGACAATCTGCCTATATTAACCAGATTAATTCTTAA 798 0.4286 MNLSSLSFTAQHLVAPIYSTLPSAAIRGKSADSVAIEGCNLNFSFTARQTKDVQALRDCSLRIPSGQFWMLLGPNGCGKSTLLKILAGLLTPSSGTVYVKEPKSFVFQNPDHQVVMPTVDSDVAFGLGKINLANDEVRSRVSQALHAVGLADYMKRSVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDETDQVGVIKAVRNCLDTSEEVTALWVTHRLEELEYADGAIYMEDGKVVMHGDVTSIRRFIKARQSAYINQINS 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g03197 265 FunFam ABC transporter I family member 10 32 262 - -
Vifa2g03197 265 SMART AAA_5 65 238 IPR003593 GO:0016887
Vifa2g03197 265 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 36 261 IPR003439 GO:0005524
Vifa2g03197 265 CDD ABC_cobalt_CbiO_domain1 42 238 IPR015856 GO:0005524|GO:0016020|GO:0055085
Vifa2g03197 265 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 33 253 IPR027417 -
Vifa2g03197 265 Gene3D - 31 264 IPR027417 -
Vifa2g03197 265 PANTHER ABC TRANSPORTER I FAMILY MEMBER 10 36 249 - -
Vifa2g03197 265 Pfam ABC transporter 56 188 IPR003439 GO:0005524
Vifa2g03197 265 ProSitePatterns ABC transporters family signature. 161 175 IPR017871 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g03197 Vifa-Chr2 918258494 918261249 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g03197 36 243 Calmodulin-binding Proteins AT2G36910 31.416 4.41e-22 93.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g03197 2 918258494 918261249 Vifa2g03197 2 918258494 918261249 ECH