Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g03193 ATGCCCACGTGGTGGGGTAAGAAATCAACTAAGACCAAGGAGCTTCTTCATCAAGAAGAGCCACGTGGCGGAAGCAGCAGTGGTGGAAGTAGCGGTGCTGGCGGCGGTGTCATTAATTTCAATTTTAACAAGTCTCCGATTAGAAACGCTACCAATTATAAAAACGGTTATTATAAACCCGATAACCCTAGGAGTTTTGAAGATGCTTCTAATTTTAGAAATTCTCCCAGATCTAGTAGAGATTTCACTCCTTCAACCACCACCGCTGCCGGCTCTTCTTCTTTTTGGGATTCCGACGCCGGTGACAGGATAGGCCTTCCTCTGCCTCGTCCTTCTGTTTCTTCTACACAAAGCTTGAGCAATGATCAGGGAATTACTTTTGGATCTGCTTCTGTTTCTGGCTCTAGCGTTAGCTCCAATGGCTCTTGTGATGATCCTTCAGCTTTTAACTCTCAAATTAATAGCGTTAGGGGACAATGTGAAACAAAGTTCAATGTGACGTCTAAAAGCCCCGGACCTGGGTCAAGAGGACCTACCAGCCCAACATCACCTCTTCATCCAAGGTTGCATGTTTTGAGTCTTGACTCGCCTACAGGAAGGCAAGAAGATGGAAGGAGTGAGTGTCATCCGTTGCCTCTTCCTCCAGGATCTCCGACTAGTCCATCTTCAGCTCTTCCCAACAACACGAGAACAAATGGAATAGCAGAAAATTGTACCACTAACCGTAGCAGGTGGAAGAAAGGAAAGCTTCTAGGTCGGGGAACATTTGGGCATGTTTACCTGGGATTCAATAGTGAAAGCGGACAATTGTGTGCAATAAAAGAAGTCAGGGCTGTATGTGATGATCAAACCTCAAAAGAGTGCCGCAAACAACTTAGTCAGGAGATAAATTTGCTGAGTCAGCTTTCACATCCAAACATTGTTCAATACTATGGAAGTGATTTGGGAGAAGAAACACTTTCCATTTATTTGGAATACGTTTCTGGAGGTTCTATTCATAAATTACTTCAGGAATATGGGTCCTTCAAGGAGCCTGTTATCCAAAATTATACAAGGCAGATTGTCTCTGGACTTTCATATCTTCATGGGAGAAATACAGTGCATAGGGATATCAAAGGGGCTAACATACTAGTTGATCCTAATGGTGAAATCAAGCTGGCAGACTTTGGAATGGCTAAACATATAAATTCTTCATCCTCAATGCTTTCTTTCAAAGGAAGTCCACATTGGATGGCGCCAGAGGTTGTAATGAATACAAATGGCTATAGTCTTCCAGTTGATATATGGAGCTTGGGATGCACAATTCTTGAAATGGCAACATCAAAGCCTCCTTGGAGTCAGTATGAAGGGGTAGCTGCAATATTTAAAATTGGCAACAGCAAAGACATGCCTGAAATTCCTGATCATCTCTCAAATGATGCAAAGAATTTCATCAAGCTATGCTTGCATAGAGATCCTGCAACTCGCCCTACAGCCCATATGTTACTTAATCACCCTTTTATTCGAGATGAGTCAGCAACAAAAACTGCAAATGTCAGAATTACCAAGGATGCTTTTCCCTACATGTTTGATGGAAGCCGGACGCCGCCAGCTTCAGATCTTCATTCCAATAGAACTTGTATTGCTTCTCACGAAGCAGAACATACAACAAAACCAGTTGTTGCAGCTTCCCGAGCAATAAGGAGCCCAAGAGACAACACAAGAATGATCACATCCTTACCAGTATCTCCGTGTTCAAGTCCATTGCGACAGTCCGGTCCGGCACACAAGAGCTGTTTCCTTTCTCCTCCACATCCAAATTATTCAATGATGGGACATCATACCCTTGCTTCATATGAATCATATCCAATGAGATCAAATGCCAAGTTTACTCTTGATCCTTGGCATGAAATACCTATGCACAAAGCCCACACACCCGGTGGATCCCCAAGGAGACTTATTTGA 1944 0.4331 MPTWWGKKSTKTKELLHQEEPRGGSSSGGSSGAGGGVINFNFNKSPIRNATNYKNGYYKPDNPRSFEDASNFRNSPRSSRDFTPSTTTAAGSSSFWDSDAGDRIGLPLPRPSVSSTQSLSNDQGITFGSASVSGSSVSSNGSCDDPSAFNSQINSVRGQCETKFNVTSKSPGPGSRGPTSPTSPLHPRLHVLSLDSPTGRQEDGRSECHPLPLPPGSPTSPSSALPNNTRTNGIAENCTTNRSRWKKGKLLGRGTFGHVYLGFNSESGQLCAIKEVRAVCDDQTSKECRKQLSQEINLLSQLSHPNIVQYYGSDLGEETLSIYLEYVSGGSIHKLLQEYGSFKEPVIQNYTRQIVSGLSYLHGRNTVHRDIKGANILVDPNGEIKLADFGMAKHINSSSSMLSFKGSPHWMAPEVVMNTNGYSLPVDIWSLGCTILEMATSKPPWSQYEGVAAIFKIGNSKDMPEIPDHLSNDAKNFIKLCLHRDPATRPTAHMLLNHPFIRDESATKTANVRITKDAFPYMFDGSRTPPASDLHSNRTCIASHEAEHTTKPVVAASRAIRSPRDNTRMITSLPVSPCSSPLRQSGPAHKSCFLSPPHPNYSMMGHHTLASYESYPMRSNAKFTLDPWHEIPMHKAHTPGGSPRRLI 647
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g03193 647 MobiDBLite consensus disorder prediction 222 236 - -
Vifa2g03193 647 MobiDBLite consensus disorder prediction 164 236 - -
Vifa2g03193 647 MobiDBLite consensus disorder prediction 1 121 - -
Vifa2g03193 647 MobiDBLite consensus disorder prediction 67 95 - -
Vifa2g03193 647 MobiDBLite consensus disorder prediction 23 58 - -
Vifa2g03193 647 ProSitePatterns Protein kinases ATP-binding region signature. 251 274 IPR017441 GO:0005524
Vifa2g03193 647 ProSiteProfiles Protein kinase domain profile. 245 501 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g03193 647 Pfam Protein kinase domain 246 501 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g03193 647 SUPERFAMILY Protein kinase-like (PK-like) 243 576 IPR011009 -
Vifa2g03193 647 CDD STKc_MEKK1_plant 244 501 - -
Vifa2g03193 647 MobiDBLite consensus disorder prediction 164 182 - -
Vifa2g03193 647 MobiDBLite consensus disorder prediction 131 150 - -
Vifa2g03193 647 FunFam Mitogen-activated protein kinase kinase kinase 243 525 - -
Vifa2g03193 647 SMART serkin_6 245 501 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g03193 647 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 91 509 - -
Vifa2g03193 647 Gene3D Transferase(Phosphotransferase) domain 1 241 523 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g03193 Vifa-Chr2 917834607 917838985 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g03193 1 564 MAP Kinase Kinase Kinase AT1G53570 56.620 0.0 546
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Vifa2g03193 Pkinase 2e-74 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g03193 K04421 - gmx:100813122 910.598