Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g03188 ATGGCCGAAACAAAATTGATTCCAGGGTTTCGGTTTCATCCCACTGATGTTGAGCTCATTATGTATTTTCTCAAGAGGAAGATTATTGGTAGGAAGTTCCCTTTTGATGTCATTGCTGAACTTGACATTTACAAGTATGCTCCATGGGATCTTCCAGATAAATCTTTGCTCAAAACTGGGGATTTGAAATGGTACTTCTTTAGCCCTGTAGGAAAGAAATATTGCACTGGAGGGAGGATGAATCGAGCTACTGAAATTGGGTACTGGAAGACTACAGGGAAGGATAGAGCAGTTGAACATAAGAATCAAGTGGTGGGGATGATTAGAACCCTGGTTTTTCACATTGGCAAAGCTCCTAAAGGAGACAGAACTGATTGGGTAATGCATGAATTCAGACTTGAAGACAAAGACTTAGCTGACAAAGGCATTGCACAGAATTCCTACGTGATTTGTAGGGTATTTCAAAAGGAGGGTCTTGGTCCCAGAAATGGTGCCCAGTATGGTAAACCGTTTAATGAAAAAGACTGGGATAGTGAAGAGGAAATTGATTGTTTGCAACCTGTCCCTGCTGCTGCTGTGTCTGCACCTTCTCCATTTCTACCTAGCTCAAGCCATATTTCCGTAGCAAATGACATGCATCCCTTGGTAAGTGGCGTTGGACTGAACTCTTTATCATGTGTATCAAGATCAATGCCCTCTGGCTTGCCACACCCTTCAGCTCCAAGCAATCAAGTTGATGATGACATTTTAACCATGCTTGCTATTTTCAAAGACGATGATACATTGGCAGGGAATGAAAACATTGGATCTGAGAAGGTTGATAATCCTGGTCAGGCAAACAATGCTGAAGGCGAACCTTATTTAGATCCAAATGAGATATTCGGGGACTTGGGAGATCTTCAAAGCTTGGTTGGATTGGATGATGGAGATGGCTTTTCCCATGGCCAAAGAGATGAATATACTAAAAATGAAATGCCTTCTACTGGTGGCGACGTCTCTTTGTTTTGTGACCCCCATAATAATTACTTGGAGTTGATTGACCTAGACGTGCCATTGTTCTAG 1062 0.4218 MAETKLIPGFRFHPTDVELIMYFLKRKIIGRKFPFDVIAELDIYKYAPWDLPDKSLLKTGDLKWYFFSPVGKKYCTGGRMNRATEIGYWKTTGKDRAVEHKNQVVGMIRTLVFHIGKAPKGDRTDWVMHEFRLEDKDLADKGIAQNSYVICRVFQKEGLGPRNGAQYGKPFNEKDWDSEEEIDCLQPVPAAAVSAPSPFLPSSSHISVANDMHPLVSGVGLNSLSCVSRSMPSGLPHPSAPSNQVDDDILTMLAIFKDDDTLAGNENIGSEKVDNPGQANNAEGEPYLDPNEIFGDLGDLQSLVGLDDGDGFSHGQRDEYTKNEMPSTGGDVSLFCDPHNNYLELIDLDVPLF 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g03188 353 Gene3D NAC domain 15 159 IPR036093 GO:0003677|GO:0006355
Vifa2g03188 353 MobiDBLite consensus disorder prediction 265 288 - -
Vifa2g03188 353 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 4 215 - -
Vifa2g03188 353 ProSiteProfiles NAC domain profile. 6 156 IPR003441 GO:0003677|GO:0006355
Vifa2g03188 353 MobiDBLite consensus disorder prediction 306 326 - -
Vifa2g03188 353 SUPERFAMILY NAC domain 4 156 IPR036093 GO:0003677|GO:0006355
Vifa2g03188 353 Pfam No apical meristem (NAM) protein 8 133 IPR003441 GO:0003677|GO:0006355
Vifa2g03188 353 FunFam Nac domain-containing protein 86 15 159 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g03188 Vifa-Chr2 916480201 916489157 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g03188 1 267 NAC Transcription Factor Family AT5G09330 49.477 4.06e-90 277
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vifa2g03188 NAM 1.8e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g03188 - - adu:107470479 457.218