Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g03172 ATGGCTACCTCCGCAGCAGGACCACGTCAGTTGTCTCAGAAGGAAGCTGATATTCAGATGATGTTGGCGGCTGATGTCCACCTCGGCACCAAGAACTGTGACTTCCAGATGGAGCGTTACATTTTCAAACGCAGGAACGACGGGATTTATATCATCAATCTTGGAAAGACTTGGGAGAAATTACAACTTGCTGCAAGAGTCATTGTTGCCATTGAAAACCCTCAGGATATCATTGTCCAATCTGCAAGGCCTTATGGACAAAGAGCCGTTCTTAAGTTTGCTCAGTACACCGGAGCTCATGCTATTGCTGGAAGACACACTCCTGGAACCTTCACCAATCAGCTCCAAACTTCCTTCAGTGAGCCTCGTCTTCTCATCCTCACTGATCCAAGAACTGATCACCAGCCAATCAAGGAAGCTGCCCTTGGGAACATTCCCACAATTGCTTTCTGTGACACTGATTCTCCTATGAGATATGTTGACATTGGAATTCCTGCTAACAACAAGGGGAAGCACAGCATTGGTTGTCTCTTTTGGCTTTTGGCTAGGATGGTGCTACAAATGCGTGGTACTATTCGCCCTGGTCTTCAGTGGGATGTGATGGTGGATCTGTTCTTCTACAGAGAACCCGAAGAGGCCAAAGAGCAAGAGGAGGATGAAGTTCCTGTTCCAGATTACGCCATTGCTGACTTCAATGCAGGTGGTCCATCAGATGGACAGTGGCCTGCAGCCATTGAGCAACAATGGCCTGATGCAGCTCCACAGCCTATTCCAGCAGTTCCTGCTGTCAACTGGACAGCCCCAGAAGCTGGGGAATGGGGTGAAGCTGTTCCACCTCCACAACAAATTCCTACTCCCGGAATTGAATCCGTGGCAGCTACAGGCTGGGAATAA 894 0.4888 MATSAAGPRQLSQKEADIQMMLAADVHLGTKNCDFQMERYIFKRRNDGIYIINLGKTWEKLQLAARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFSEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGLQWDVMVDLFFYREPEEAKEQEEDEVPVPDYAIADFNAGGPSDGQWPAAIEQQWPDAAPQPIPAVPAVNWTAPEAGEWGEAVPPPQQIPTPGIESVAATGWE 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g03172 297 Gene3D - 17 221 - -
Vifa2g03172 297 NCBIfam 30S ribosomal protein S2 13 209 IPR005707 GO:0003735|GO:0006412|GO:0015935
Vifa2g03172 297 Hamap 40S ribosomal protein SA [rps-0]. 5 276 IPR027498 GO:0003735|GO:0006412|GO:0015935
Vifa2g03172 297 PRINTS Ribosomal protein S2 signature 139 150 IPR001865 GO:0003735|GO:0005840|GO:0006412
Vifa2g03172 297 PRINTS Ribosomal protein S2 signature 48 57 IPR001865 GO:0003735|GO:0005840|GO:0006412
Vifa2g03172 297 PRINTS Ribosomal protein S2 signature 97 114 IPR001865 GO:0003735|GO:0005840|GO:0006412
Vifa2g03172 297 PRINTS Ribosomal protein S2 signature 122 139 IPR001865 GO:0003735|GO:0005840|GO:0006412
Vifa2g03172 297 PRINTS Ribosomal protein S2 signature 18 36 IPR001865 GO:0003735|GO:0005840|GO:0006412
Vifa2g03172 297 PRINTS Ribosomal protein S2 signature 160 174 IPR001865 GO:0003735|GO:0005840|GO:0006412
Vifa2g03172 297 MobiDBLite consensus disorder prediction 271 297 - -
Vifa2g03172 297 FunFam 40S ribosomal protein SA 17 223 - -
Vifa2g03172 297 CDD RPS2 21 187 IPR001865 GO:0003735|GO:0005840|GO:0006412
Vifa2g03172 297 ProSitePatterns Ribosomal protein S2 signature 2. 122 146 IPR018130 GO:0003735|GO:0005840|GO:0006412
Vifa2g03172 297 PANTHER 40S RIBOSOMAL PROTEIN SA 7 296 IPR005707 GO:0003735|GO:0006412|GO:0015935
Vifa2g03172 297 SUPERFAMILY Ribosomal protein S2 13 203 IPR023591 -
Vifa2g03172 297 Pfam Ribosomal protein S2 120 185 IPR001865 GO:0003735|GO:0005840|GO:0006412
Vifa2g03172 297 Pfam Ribosomal protein S2 21 115 IPR001865 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g03172 Vifa-Chr2 913014608 913016499 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g03172 5 297 Cytoplasmic Ribosomal Protein Gene Family AT3G04770 71.959 7.64e-149 417
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g03172 K02998 - gmx:100805318 529.25