Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g03171 ATGGCTACCTCCGCAGCAGGACCACGTCAGTTGTCTCAGAAGGAAGCTGATATTCAGATGATGTTGGCGGCTGATGTCCACCTCGGCACCAAGAACTGTGACTTCCAGATGGAGCGTTACATTTTCAAACGCAGGAACGACGGGATTTATATCATCAATCTTGGAAAGACTTGGGAGAAATTACAACTTGCTGCAAGAGTCATTGTTGCCATTGAAAACCCTCAGGATATCATTGTCCAATCTGCAAGGCCTTATGGACAAAGAGCCGTTCTTAAGTTTGCTCAGTACACCGGAGCTCATGCTATTGCTGGAAGACACACTCCTGGAACCTTCACCAATCAGCTCCAAACTTCCTTCAGTGAGCCTCGTCTTCTCATCCTCACTGATCCAAGAACTGATCACCAGCCAATCAAGGAAGCTGCCCTTGGGAACATTCCCACAATTGCTTTCTGTGACACTGATTCTCCTATGAGATATGTTGACATTGGAATTCCTGCTAACAACAAGGGGAAGCACAGCATTGGTTGTCTCTTTTGGCTTTTGGCTAGGATGGTGCTACAAATGCGTGGTACTATTCGCCCTGGTCTTCAGTGGGATGTGATGGTGGATCTGTTCTTCTACAGAGAACCCGAAGAGGCCAAAGAGCAAGAGGAGGATGAAGTTCCTGTTCCAGATTACGCCATTGCTGACTTCAATGCAGGTGGTCCATCAGATGGACAGTGGCCTGCAGCCATTGAGCAACAATGGCCTGATGCAGCTCCACAGCCTATTCCAGCAGTTCCTGCTGTCAACTGGACAGCCCCAGAAGCTGTTGCAGGGGAATGGGGTGAAGCTGTTCCACCTCCACAACAAATTCCTACTCCCGGAATTGAATCCGTGGCAGCTACAGGCTGGGAATAA 900 0.4889 MATSAAGPRQLSQKEADIQMMLAADVHLGTKNCDFQMERYIFKRRNDGIYIINLGKTWEKLQLAARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFSEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGLQWDVMVDLFFYREPEEAKEQEEDEVPVPDYAIADFNAGGPSDGQWPAAIEQQWPDAAPQPIPAVPAVNWTAPEAVAGEWGEAVPPPQQIPTPGIESVAATGWE 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g03171 299 PRINTS Ribosomal protein S2 signature 48 57 IPR001865 GO:0003735|GO:0005840|GO:0006412
Vifa2g03171 299 PRINTS Ribosomal protein S2 signature 97 114 IPR001865 GO:0003735|GO:0005840|GO:0006412
Vifa2g03171 299 PRINTS Ribosomal protein S2 signature 18 36 IPR001865 GO:0003735|GO:0005840|GO:0006412
Vifa2g03171 299 PRINTS Ribosomal protein S2 signature 139 150 IPR001865 GO:0003735|GO:0005840|GO:0006412
Vifa2g03171 299 PRINTS Ribosomal protein S2 signature 122 139 IPR001865 GO:0003735|GO:0005840|GO:0006412
Vifa2g03171 299 PRINTS Ribosomal protein S2 signature 160 174 IPR001865 GO:0003735|GO:0005840|GO:0006412
Vifa2g03171 299 Pfam Ribosomal protein S2 120 185 IPR001865 GO:0003735|GO:0005840|GO:0006412
Vifa2g03171 299 Pfam Ribosomal protein S2 21 115 IPR001865 GO:0003735|GO:0005840|GO:0006412
Vifa2g03171 299 Gene3D - 17 221 - -
Vifa2g03171 299 FunFam 40S ribosomal protein SA 17 223 - -
Vifa2g03171 299 NCBIfam 30S ribosomal protein S2 13 209 IPR005707 GO:0003735|GO:0006412|GO:0015935
Vifa2g03171 299 SUPERFAMILY Ribosomal protein S2 13 203 IPR023591 -
Vifa2g03171 299 MobiDBLite consensus disorder prediction 276 299 - -
Vifa2g03171 299 CDD RPS2 21 187 IPR001865 GO:0003735|GO:0005840|GO:0006412
Vifa2g03171 299 ProSitePatterns Ribosomal protein S2 signature 2. 122 146 IPR018130 GO:0003735|GO:0005840|GO:0006412
Vifa2g03171 299 Hamap 40S ribosomal protein SA [rps-0]. 5 278 IPR027498 GO:0003735|GO:0006412|GO:0015935
Vifa2g03171 299 PANTHER 40S RIBOSOMAL PROTEIN SA 7 298 IPR005707 GO:0003735|GO:0006412|GO:0015935
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g03171 Vifa-Chr2 913014608 913016499 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g03171 5 299 Cytoplasmic Ribosomal Protein Gene Family AT3G04770 71.812 4.42e-149 417
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g03171 K02998 - gmx:100805318 531.176