Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vifa2g03167 | ATGGCTCCGGGGACCTCATCGCCTTCCTCTCCGAAGCTCACGAGCTTCATCCACCGCACGCATGCACCGCACCACATTCGGAAAAAGACATTTGATTCGCCGCCGGTCAAGAAGTACAGGTCAATGGAGGATATAATGGCGAGGGCGAAGTACGCCGTGGTGGAGAAGGAGGATTACGGTAGCCTCATGTGCGAGCAATGTGGCACCGGTGAGAAACCGGAGGAGCTGCTGTTGTGCGACAAATGTGACAAAGGATTCCATATGAAATGTGTTAGGCCGATTGTTGTGAGGATTCCGATTGGTTCCTGGATTTGCCCTAAGTGCTCAGGGGTGAAGAAAGTGAAAAAGTTCACGCAAAGGAGAATACTTGATTTCTTCGGGCTTCCAAGGGATTTACCTGATTTCAGAAGGAACAATTCTTCTTCTCGGGATGCTCAGAGGCGGCGAAGACGTCCAAGACCGCTGGTGTTACAAAAGAAAAGGAGAAGGCTACTACCTTTTGTTCCTACGGTAGATCCGGCCAGGAGACTCAAACAAATGGCCTCCCTGGCTTCTGCCTTAACCGCACTAAACATGAAATTCTGCAATAGCCTAACCTACTCTCTAGGAATGGCTCCCAGAGATGCGAATCAGGCCACCTTTGAAAACGGTGGAATGCAGAATCTTAATAAGGAAGATACAAAAACCTTAGAGCGCTGCATAGCTATGACCAAACGAGGCAAATTCCCACCATTAATGGTGGTTTTTGATTCATGTCAAGGCTATACCGTGGAAGCTGATGGCCCTATAAAAGACATGACATTTCTTGCTGAATACACCGGCGATGTGGATTTTATTAAGAACAGAGAAACTGATGATTGTGACAGTATGATGACGCTGCTTCTTTCAGGAAGCACTGCTACCAGTCTTGTTGCCTGTGCTGATAAACGTGGAAACATCGCTCGCTTTATCAGTGGCATCAACAATCATACTCCGGACGGTAAGAAGAAGCAGAACTGTAAATGTGTGAGATACAATGTTAATGAAGAATCGCGGGTCTTTTTGATTGCTACCCGAGATATTTCCAAGGGGGAGAGACTTTACTATGATTATAATGGTTATGAGAATCAATACCCAACTCAACATTTTGTCTGA | 1134 | 0.4638 | MAPGTSSPSSPKLTSFIHRTHAPHHIRKKTFDSPPVKKYRSMEDIMARAKYAVVEKEDYGSLMCEQCGTGEKPEELLLCDKCDKGFHMKCVRPIVVRIPIGSWICPKCSGVKKVKKFTQRRILDFFGLPRDLPDFRRNNSSSRDAQRRRRRPRPLVLQKKRRRLLPFVPTVDPARRLKQMASLASALTALNMKFCNSLTYSLGMAPRDANQATFENGGMQNLNKEDTKTLERCIAMTKRGKFPPLMVVFDSCQGYTVEADGPIKDMTFLAEYTGDVDFIKNRETDDCDSMMTLLLSGSTATSLVACADKRGNIARFISGINNHTPDGKKKQNCKCVRYNVNEESRVFLIATRDISKGERLYYDYNGYENQYPTQHFV | 377 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vifa2g03167 | 377 | PANTHER | N-LYSINE METHYLTRANSFERASE KMT5A | 146 | 375 | - | - | |
Vifa2g03167 | 377 | CDD | PHD_RSF1 | 63 | 108 | - | - | |
Vifa2g03167 | 377 | ProSiteProfiles | Zinc finger PHD-type profile. | 61 | 111 | IPR019787 | - | |
Vifa2g03167 | 377 | ProSiteProfiles | SET domain profile. | 243 | 365 | IPR001214 | GO:0005515 | |
Vifa2g03167 | 377 | SUPERFAMILY | SET domain | 235 | 365 | IPR046341 | - | |
Vifa2g03167 | 377 | SUPERFAMILY | FYVE/PHD zinc finger | 34 | 109 | IPR011011 | - | |
Vifa2g03167 | 377 | CDD | SET_ATXR5_6-like | 240 | 377 | - | - | |
Vifa2g03167 | 377 | Pfam | SET domain | 241 | 365 | IPR001214 | GO:0005515 | |
Vifa2g03167 | 377 | SMART | PHD_3 | 63 | 109 | IPR001965 | - | |
Vifa2g03167 | 377 | Gene3D | SET domain | 149 | 377 | IPR046341 | - | |
Vifa2g03167 | 377 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 9 | 122 | IPR013083 | - | |
Vifa2g03167 | 377 | FunFam | Histone-lysine N-methyltransferase ATXR5 | 148 | 377 | - | - | |
Vifa2g03167 | 377 | ProSitePatterns | Zinc finger PHD-type signature. | 64 | 108 | IPR019786 | - | |
Vifa2g03167 | 377 | Pfam | PHD-finger | 63 | 109 | IPR019787 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vifa2g03167 | Vifa-Chr2 | 911563464 | 911566593 | Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vifa2g03167 | 36 | 116 | C2H2 Transcription Factor Family | AT3G01460 | 31.111 | 1.19e-10 | 61.6 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TR | PHD | Vifa2g03167 | SET | 7.1e-07 | No_clan |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vifa2g03167 | K24406 | - | gmx:100785817 | 507.679 |