Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g03167 ATGGCTCCGGGGACCTCATCGCCTTCCTCTCCGAAGCTCACGAGCTTCATCCACCGCACGCATGCACCGCACCACATTCGGAAAAAGACATTTGATTCGCCGCCGGTCAAGAAGTACAGGTCAATGGAGGATATAATGGCGAGGGCGAAGTACGCCGTGGTGGAGAAGGAGGATTACGGTAGCCTCATGTGCGAGCAATGTGGCACCGGTGAGAAACCGGAGGAGCTGCTGTTGTGCGACAAATGTGACAAAGGATTCCATATGAAATGTGTTAGGCCGATTGTTGTGAGGATTCCGATTGGTTCCTGGATTTGCCCTAAGTGCTCAGGGGTGAAGAAAGTGAAAAAGTTCACGCAAAGGAGAATACTTGATTTCTTCGGGCTTCCAAGGGATTTACCTGATTTCAGAAGGAACAATTCTTCTTCTCGGGATGCTCAGAGGCGGCGAAGACGTCCAAGACCGCTGGTGTTACAAAAGAAAAGGAGAAGGCTACTACCTTTTGTTCCTACGGTAGATCCGGCCAGGAGACTCAAACAAATGGCCTCCCTGGCTTCTGCCTTAACCGCACTAAACATGAAATTCTGCAATAGCCTAACCTACTCTCTAGGAATGGCTCCCAGAGATGCGAATCAGGCCACCTTTGAAAACGGTGGAATGCAGAATCTTAATAAGGAAGATACAAAAACCTTAGAGCGCTGCATAGCTATGACCAAACGAGGCAAATTCCCACCATTAATGGTGGTTTTTGATTCATGTCAAGGCTATACCGTGGAAGCTGATGGCCCTATAAAAGACATGACATTTCTTGCTGAATACACCGGCGATGTGGATTTTATTAAGAACAGAGAAACTGATGATTGTGACAGTATGATGACGCTGCTTCTTTCAGGAAGCACTGCTACCAGTCTTGTTGCCTGTGCTGATAAACGTGGAAACATCGCTCGCTTTATCAGTGGCATCAACAATCATACTCCGGACGGTAAGAAGAAGCAGAACTGTAAATGTGTGAGATACAATGTTAATGAAGAATCGCGGGTCTTTTTGATTGCTACCCGAGATATTTCCAAGGGGGAGAGACTTTACTATGATTATAATGGTTATGAGAATCAATACCCAACTCAACATTTTGTCTGA 1134 0.4638 MAPGTSSPSSPKLTSFIHRTHAPHHIRKKTFDSPPVKKYRSMEDIMARAKYAVVEKEDYGSLMCEQCGTGEKPEELLLCDKCDKGFHMKCVRPIVVRIPIGSWICPKCSGVKKVKKFTQRRILDFFGLPRDLPDFRRNNSSSRDAQRRRRRPRPLVLQKKRRRLLPFVPTVDPARRLKQMASLASALTALNMKFCNSLTYSLGMAPRDANQATFENGGMQNLNKEDTKTLERCIAMTKRGKFPPLMVVFDSCQGYTVEADGPIKDMTFLAEYTGDVDFIKNRETDDCDSMMTLLLSGSTATSLVACADKRGNIARFISGINNHTPDGKKKQNCKCVRYNVNEESRVFLIATRDISKGERLYYDYNGYENQYPTQHFV 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g03167 377 PANTHER N-LYSINE METHYLTRANSFERASE KMT5A 146 375 - -
Vifa2g03167 377 CDD PHD_RSF1 63 108 - -
Vifa2g03167 377 ProSiteProfiles Zinc finger PHD-type profile. 61 111 IPR019787 -
Vifa2g03167 377 ProSiteProfiles SET domain profile. 243 365 IPR001214 GO:0005515
Vifa2g03167 377 SUPERFAMILY SET domain 235 365 IPR046341 -
Vifa2g03167 377 SUPERFAMILY FYVE/PHD zinc finger 34 109 IPR011011 -
Vifa2g03167 377 CDD SET_ATXR5_6-like 240 377 - -
Vifa2g03167 377 Pfam SET domain 241 365 IPR001214 GO:0005515
Vifa2g03167 377 SMART PHD_3 63 109 IPR001965 -
Vifa2g03167 377 Gene3D SET domain 149 377 IPR046341 -
Vifa2g03167 377 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 9 122 IPR013083 -
Vifa2g03167 377 FunFam Histone-lysine N-methyltransferase ATXR5 148 377 - -
Vifa2g03167 377 ProSitePatterns Zinc finger PHD-type signature. 64 108 IPR019786 -
Vifa2g03167 377 Pfam PHD-finger 63 109 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g03167 Vifa-Chr2 911563464 911566593 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g03167 36 116 C2H2 Transcription Factor Family AT3G01460 31.111 1.19e-10 61.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Vifa2g03167 SET 7.1e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g03167 K24406 - gmx:100785817 507.679