Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g03166 ATGAGTGGAAGTGATAGAAAGCGCTCTTCAAAGTGGGATTTGAGTGATGAACCCAAATTCACATCCAGTAGCAAGCCAATACGGTCTGCGCGGTCCTCTGCAGATGTTGCTGGTAGCAATAGTTCAAAATGGGCTTATTCAGAAGGAAATGATAACTTAAGACCTGTTATGAGATATTCATCGAAGGAATATTTTTCTGGAGATAGATGTTCAAATGAGGAAGATGCTATGATTAAAGATCATAGAGTGTTGGATACAAGAAAATGGGACACTGATGGAAGTTATGAGGAATGGAAACAAAAGAGACACAGTCGTTCTCCTAAAAATGCTTGGAGCAGAAGCAGTCGGAGCCGTAGCCGTAGCCGTAGCCCTCCTCGTGGTTATAGGCGGGATTCGGGAGTTGATGATAGAAAAAGGATGAGGGTTGGAGGATCAACACGACCATGCAGAGATTTTGCTGCTGGTAATTGCAGAAGAGGCAGTCTTTGCAACTTTGTGCATCATGATGACCAAAATCATGAGGATAGTTGGGAAGGCAGCTGTAGAATGGGAGCATCTTGCAAGTATGTGCATGATAACGATTCTGATGGATATGGTAAAGTTTCTGTGGACGAGTTCACTAGAGAAAGGGAAGATGGAGGAGCTCCCAGATATTTTGCTACCCATGAGAGAGAGGACCGTCCTCTTAAGAGTGGTAGATCTAATGAAGCTTGTATAAATTTTGCAAAAGGAGGAAGGTGTAGAATGGGAACATCTTGCAAGTTTGTGCATGATAATGACTCTGATGGATATGGCAAAGTATTTATGGATGAATTCACTAGAGAAAGGGAAATTGACAGAAGGCACAGAGATGATTCTTTTGAACAGAGAGGCGGGCATGTGCCTAGCCGCACTAGTGATACGCCTTGCAAATTTTTTGCTAGTGGAAATTGTCGAAATGGTAAATATTGTAGGTTTTCTCACGATAGGCAAGCATTTAAGAGCCCTAATAGAAGATTAAGGGATGATAGATGGGCAAGAAATCCAGGTGGAGATCATCAAATGGATAGACGAAAGTTGAGCGATTCCATTAGTCCAAATAGAAGGCTAAGAGATGATAGGTGGGGTTCAGATGGCGACTTGGCTGATTCAGATAGAGTCGGGGACAGGCCAAAGCGGAGCGATATAATTTCTGTCTCTGATACAGCAAAGCTGATGGAGAATGAAAGTGGAAATGTAGGTGCCACAGAGCCAGGATTTACTGCTTTGCCGATGACAGATGAATGGGGGCATGGTTTAGATAAGAGCAGGCTGCATGGTACACCGCCAATTTCAAATGATAAGAAGGAAGCCAATCGCTGGATAGCAGGAAATACTGGTGCCAACATGCACGGTTCCCAGTCATTAGGCACAGCGGACATTTGGCCAGGTGATGCAGAAATGTCTCCTGATTGGAATTTTAAGACAGGATCTTCTAGTCATATGGAAGAAGATGCACAGAATAAGCGTGGTATAAGCCAGGATGATACGTATTTAGCCATCTCTGAACAGGACAGAATACAACTTGCTCCAGGTCAAAGCATCAACCAGAATGCACAGAATGTAAATCCCTTGCATACTTCCAGCAGCCATGCAGTTGGACAAAGTCAACTAGATGTTCGTACTTTTCCTTCAAGAGAAGGAACTGTTGATGCTACCCACAGCCGAGAAGTATCATCTACTGAGAAAAAGTACTCTGTGGAACCAAATCCCTTGCATACTTCCAGCAGCCATGCAGTTGGACAAAGTCAACTGGATGTTCGTACTTTTCCTTCAAGAGAAGGAACTGTTGATGCTACCCGCAGCCAAGAAGCATCTACTGAGAAAAAGCACAATGTGGAACCAAATATCATGGATTCGGGCTTATCACAAGTTGGTTCAATAAATCCTCCAACTCAAAATGCGGTAAGCAATGAACAGCTTGCCCAACTCACGGATCTATCAGCCTCTCTGGCTCATATCCTTGGATCAGGTCAGCAGCTGCCGCAGCTATACGCTGCCTTAAATTCTCACGATTTAAATGACAGTCCTTCCCAAGCAAATACTCAAGTGCCTGCAATGCCTGTTTCAAACACATGCATAAAGCCGGATCCTGCTGTTGGGCTCTCAAAGCAGTATGATCCAATGAATGGTAGTAATGAGCAAAAGAATGCTGATGCAAGTGGAGTGCCGCCAACCATTCCTCCAAGTAAAAATATCGCCAAAGTAGAAATTCTGCCACAGTTGTCTAATTTAGGAAAACAAATTTATGGTGATTCTATTAAGGGTGCCTCCTCAGAACTTATCATGAGTGACAATCTAATCCGTTTGCAGCCTGGTCATAACACAGTGGTTTATAACAATGAAGAGGTAGCTAAGGAAAGGAAGAATTCTCAAGATGATCTTAAAAGTACAAAAGAGAATGGTCCACAAAACATGGACCAAGATGGTAAATCTGATGATGCCAAACAAACAAAGGATACGAAAGGGATTCGTGCATTTAAATTTGCACTGGCTGAGTTTGTTAAGGAGCTTTTGAAACCAGCATGGAAAGAAGGACAAATAGATAAAGAAAATTATAAAACAATTGTGAAGAAAGTTGTTGAAAAAGTATCGAGTACCATGCAGGGGGCCAACATTCCTCAGACTCAAGAGAAAATTGACCAATATTTGTCATTTTCAAAGCCAAAGGTTAACAAACTTGTACAGGCCTATGTAGAAAAGGTTCAGAAGGGTTAG 2736 0.4258 MSGSDRKRSSKWDLSDEPKFTSSSKPIRSARSSADVAGSNSSKWAYSEGNDNLRPVMRYSSKEYFSGDRCSNEEDAMIKDHRVLDTRKWDTDGSYEEWKQKRHSRSPKNAWSRSSRSRSRSRSPPRGYRRDSGVDDRKRMRVGGSTRPCRDFAAGNCRRGSLCNFVHHDDQNHEDSWEGSCRMGASCKYVHDNDSDGYGKVSVDEFTREREDGGAPRYFATHEREDRPLKSGRSNEACINFAKGGRCRMGTSCKFVHDNDSDGYGKVFMDEFTREREIDRRHRDDSFEQRGGHVPSRTSDTPCKFFASGNCRNGKYCRFSHDRQAFKSPNRRLRDDRWARNPGGDHQMDRRKLSDSISPNRRLRDDRWGSDGDLADSDRVGDRPKRSDIISVSDTAKLMENESGNVGATEPGFTALPMTDEWGHGLDKSRLHGTPPISNDKKEANRWIAGNTGANMHGSQSLGTADIWPGDAEMSPDWNFKTGSSSHMEEDAQNKRGISQDDTYLAISEQDRIQLAPGQSINQNAQNVNPLHTSSSHAVGQSQLDVRTFPSREGTVDATHSREVSSTEKKYSVEPNPLHTSSSHAVGQSQLDVRTFPSREGTVDATRSQEASTEKKHNVEPNIMDSGLSQVGSINPPTQNAVSNEQLAQLTDLSASLAHILGSGQQLPQLYAALNSHDLNDSPSQANTQVPAMPVSNTCIKPDPAVGLSKQYDPMNGSNEQKNADASGVPPTIPPSKNIAKVEILPQLSNLGKQIYGDSIKGASSELIMSDNLIRLQPGHNTVVYNNEEVAKERKNSQDDLKSTKENGPQNMDQDGKSDDAKQTKDTKGIRAFKFALAEFVKELLKPAWKEGQIDKENYKTIVKKVVEKVSSTMQGANIPQTQEKIDQYLSFSKPKVNKLVQAYVEKVQKG 911
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g03166 911 MobiDBLite consensus disorder prediction 480 499 - -
Vifa2g03166 911 PANTHER PROTEIN FRIGIDA-ESSENTIAL 1 574 910 - -
Vifa2g03166 911 MobiDBLite consensus disorder prediction 1 15 - -
Vifa2g03166 911 SUPERFAMILY CCCH zinc finger 299 322 IPR036855 GO:0046872
Vifa2g03166 911 Pfam RNA-binding, Nab2-type zinc finger 179 191 - -
Vifa2g03166 911 ProSiteProfiles Zinc finger C3H1-type profile. 143 170 IPR000571 GO:0046872
Vifa2g03166 911 SMART c3hfinal6 145 169 IPR000571 GO:0046872
Vifa2g03166 911 SMART c3hfinal6 233 259 IPR000571 GO:0046872
Vifa2g03166 911 SMART c3hfinal6 297 323 IPR000571 GO:0046872
Vifa2g03166 911 ProSiteProfiles Zinc finger C3H1-type profile. 297 324 IPR000571 GO:0046872
Vifa2g03166 911 Pfam CCCH-type zinc finger 302 322 IPR041367 -
Vifa2g03166 911 MobiDBLite consensus disorder prediction 124 145 - -
Vifa2g03166 911 Coils Coil 787 807 - -
Vifa2g03166 911 MobiDBLite consensus disorder prediction 280 299 - -
Vifa2g03166 911 MobiDBLite consensus disorder prediction 328 412 - -
Vifa2g03166 911 MobiDBLite consensus disorder prediction 66 145 - -
Vifa2g03166 911 MobiDBLite consensus disorder prediction 67 104 - -
Vifa2g03166 911 MobiDBLite consensus disorder prediction 1 52 - -
Vifa2g03166 911 ProSiteProfiles Zinc finger C3H1-type profile. 232 260 IPR000571 GO:0046872
Vifa2g03166 911 Gene3D - 230 329 - -
Vifa2g03166 911 MobiDBLite consensus disorder prediction 789 825 - -
Vifa2g03166 911 MobiDBLite consensus disorder prediction 523 549 - -
Vifa2g03166 911 MobiDBLite consensus disorder prediction 16 48 - -
Vifa2g03166 911 Gene3D - 141 203 - -
Vifa2g03166 911 SUPERFAMILY CCCH zinc finger 235 260 IPR036855 GO:0046872
Vifa2g03166 911 MobiDBLite consensus disorder prediction 570 589 - -
Vifa2g03166 911 MobiDBLite consensus disorder prediction 523 589 - -
Vifa2g03166 911 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 146 168 IPR000571 GO:0046872
Vifa2g03166 911 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 236 258 IPR000571 GO:0046872
Vifa2g03166 911 MobiDBLite consensus disorder prediction 328 390 - -
Vifa2g03166 911 MobiDBLite consensus disorder prediction 597 616 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g03166 Vifa-Chr2 910710182 910714597 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g03166 179 321 C2H2 Transcription Factor Family AT2G32930 24.306 1.15e-06 50.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vifa2g03166 zf-CCCH 5.9e-05 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g03166 - K22909 gmx:100783856 1002.66