Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g03155 ATGGTTAAAGAAAGAGAAAAAGCTCTTGATCTATGCATCACTGTTCCCACCTTCTTCAAATGCCCAATCTCCCTTGACGTCATGAAATCGCCCGTTAGCCTCTGCACCGGTGTCACCTACGACCGTTCCAGTATCCAACGCTGGCTAGACGACGGCAACAACACCTGTCCTGCAACCATGCAGATTCTCAAAACTAAGGATTTCGTTCCTAACCGAACTCTACATAGTCTCATCCAGATCTGGACCGACTCGGTTCATCGCCGGGTCGAACCGCCTTTTCTACCTTCAGTTCCTTCTAAAGATCAACTCCTTCAAGCCGTCACTCATTTATCCGGTCTAAACCGTATAAACAAGCTCGGCTTAATCACAAAAGTGGTTCGGTTCGGTCAGGATTCCGATCAGAACCGAACTTTTCTCGCCAAGTTAGACGGTTTTGTTTCTCTTATGGTTACTTTCCTCGACAATGTTGACGAGAGCATTGAGTTTCTCGAACAAGTTTTAACAGTGTTAGGTTTAGTTCTGGAAAAAATCCAAGATCGCGAGGGTTTTAAAAGCCATGTGTTGAAGGTGAAAGGGAGAAACAATAAATGTTTAGATTCTATGGTTCTTGTTTTACGACGAGGAAGCAATAATTCGAGAATCGCTACAGCTAGGGTGTTGAAATTCATAGCTCTTGATGGTGAATCACAGATTCTTATAGCTGAGAATGATGCTATGGTGACTGAATTACTGAACTTATCGAAACCAGAGAAAGATCCGAAGGTGATTGAAAACTGTTTATCATGCTTAGTAGCGATCTCGCAACCGAAGAGGAACAAGGTGAAATTGGTGAAATTCGGAGCAATGAAGACTTTGTCGAGGTTACTAACGGAGGCTAATACGAGCGTGAAAGTGGTGGAGAAGGCGTTGAAGCTGGTGGAGAGTGCGTCGACGACGAGTGAGGGGAGGAAGGAGATGTGTGAGGACGCGGCGTGCGTGGCGGCGATACTGAATAAAGTTTTGAAGGTGTCGAACGTGGCGACGGGGCACGCGGTGACGATACTGTGGAGTGTTTGTTATCTGTTTCGGGATCAGAAAGCGCAAGAAGCGGTTACTCAGGCGAATGGGTTAACGAAGATATTGTTGTTGATACAGGGGTATTGTTCGCCTCAGGTTCGCCAAATGTGTACGGATTTGTTGCAGATTTTTAGGGTTAATTCCAAATCGTGTCTTTCTTCTTATGAAACCAAGACATCACATATCATGCCGTTTTGA 1254 0.4514 MVKEREKALDLCITVPTFFKCPISLDVMKSPVSLCTGVTYDRSSIQRWLDDGNNTCPATMQILKTKDFVPNRTLHSLIQIWTDSVHRRVEPPFLPSVPSKDQLLQAVTHLSGLNRINKLGLITKVVRFGQDSDQNRTFLAKLDGFVSLMVTFLDNVDESIEFLEQVLTVLGLVLEKIQDREGFKSHVLKVKGRNNKCLDSMVLVLRRGSNNSRIATARVLKFIALDGESQILIAENDAMVTELLNLSKPEKDPKVIENCLSCLVAISQPKRNKVKLVKFGAMKTLSRLLTEANTSVKVVEKALKLVESASTTSEGRKEMCEDAACVAAILNKVLKVSNVATGHAVTILWSVCYLFRDQKAQEAVTQANGLTKILLLIQGYCSPQVRQMCTDLLQIFRVNSKSCLSSYETKTSHIMPF 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g03155 417 ProSiteProfiles U-box domain profile. 14 88 IPR003613 GO:0004842|GO:0016567
Vifa2g03155 417 Pfam U-box domain 15 83 IPR003613 GO:0004842|GO:0016567
Vifa2g03155 417 CDD RING-Ubox_PUB 16 68 IPR045210 -
Vifa2g03155 417 SMART Ubox_2 18 81 IPR003613 GO:0004842|GO:0016567
Vifa2g03155 417 SUPERFAMILY RING/U-box 11 83 - -
Vifa2g03155 417 Gene3D - 102 405 IPR011989 -
Vifa2g03155 417 FunFam RING-type E3 ubiquitin transferase 7 87 - -
Vifa2g03155 417 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 280 324 IPR000225 GO:0005515
Vifa2g03155 417 PANTHER WDSAM1 PROTEIN 14 405 IPR045185 GO:0061630
Vifa2g03155 417 SUPERFAMILY ARM repeat 130 399 IPR016024 -
Vifa2g03155 417 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 14 87 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g03155 Vifa-Chr2 907857377 907858630 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g03155 10 417 U-box Gene Family AT5G64660 50.831 1.69e-139 403
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g03155 - - cam:101496984 531.561
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g03155 2 907857377 907858630 Vifa2g03155 2 907857377 907858630 ECH
Vifa2g03155 2 907857377 907858630 Vifa2g03155 2 907857377 907858630 PCT