Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g03149 ATGAGTTTGGCGGACACGGATTGCTCGGAGGAAGGTTCGGTGATTCTTGAGCCTCCAGATCCTGATATCATTGAAATTGATCCTACTGCTCGTTACTTTAGGTATAAGGAAGTAATTGGCAAAGGAGCTTTCAAGACTGTCTATAAGGCATTTGATGAAATCACGGGTCTTGAAGTTGCGTGGAGCCAAGTTCGGATTGACGAGGTATTACAATCACCGGGCGACCTAGAAAGGCTGTATTCAGAAGTGCATCTTTTGAGATCTTTGAAGCATAGTAACATTGTAAGGTTCTACAATTCCTGGATTGATGACAAGCAAAGGAATGTTAACATGATAACTGAGTTGTTCACCTCAGGGAGCCTGAGACAGTACCGAAAGAAACACAAGAAGGTTGACATGAAAGCGGTTAAAGGATGGGCAAGACAGATTTTGATGGGTTTAGTTTACCTCCACAATCATTCCCCGCCTATTATACATCGGGATCTCAAGTGTGATAATATATTTATCAATGGTCACCAAGGAGTCGTTAAGATCGGAGATCTCGGGTTGGCAACTCTCTTGAAGCAGAATAACGCCAAGAGTGTAATTGGAACTCCGGAGTTTATGGCGCCTGAACTCTACGATGAAAGTTATAATGAATTGGCCGACATATATTCTTTTGGAATGTGCATGTTGGAGTTGGCTACTTCCGAGTATCCTTACCGAGAATGTAGAAACTCTGCTCAGATATACAAGAAAGTTTCATCTGGCATAAAGCCGGTTTCTCTTTCTAAAATCAAAGATCCGGAAATAAAATCGTTTATTGAGAAATGTCTTGTCCCGGCATCTCAAAGATTGTCAGCGAAGGAGCTTCTGATGGACCCTTTTCTTGAAGTGAACGGTTCAATAAAGAGTCGCCCTCTTCCATTACCAGATATCGTTCTACCTAAACTCCGAGGCTTTGAGAATCGCTGTCTGATGTCAGAAGGTCCTGCTAGTGCACGAATTGGATCCATATCAATGGATCTTGGTGATACCAATGAGCAACCATTGATCACTGTGTTTTATAATTCTGTTGATGATGCACCACCTTCTCCGTGTATTGAGATACGGAGGTTGGTGGGAGGTGATAGATTTTTTCTCAAAGGTGAAGGAAATGACGTGAATTCCGTGTCATTAGTTCTCCGGATAACTAATCAGTGTGGGCGAGCAAGAAATATCCATTTCATATTCTACCTCGATAGTGATACAGCCATCTCGGTGTCAAAAGAAATGGTTGAGCAACTTGAACTTGCCGAGCACAATGTTGTTTTCATCGCCGAGTTGATTGATCTGTTACTGAGGACATTGGTTCCTGATTGGAAGCCTTGTGTAGCTATTGACCACTTAATTTCACCAAATGGTAAACGAGCTCATCCGAGCCAACAGAAACATGACTCGCTCTTGGCAAAATACAAGCAAAACTCTGTAGATTATAGCCAAACTGTGGCAGAATATGTTGGTCATTCAACCTCAAATGAGAGATTGGCCGAAAAAGAAAACATCGATAACTTGATTTTCGAAGAAGTTTTATCCCATGCAACCAACACAAATGATTTATATTCCGTGACATCACACACTTCAGCAACATCTGACTATAATGATAAGAATTTTTCAACAGTTTCATTCGCGTCTGCTAGGTCGGGATTCACAGACTTCAACTTACCAACATTGAATGGATGGAGTCAATCCTCGCATGCATCTGAGGTTGCGGCATCCTCTGATAAAAAGAGCAAGTTTCCGAGCATCGAAAGCAACAATGTCTCATTCTATGAATCTGAGAATGAGTTGAGAATAGAGTTAGAGAAAGTTGAACGGCAATATCAAGAGACAATGAAAGACTTAACCAAAAGAAGACATGAGGCCATCATGGAGATCAGAAAGAGGCTGTCACAAAAAAAAAACACAATCATAGAATAA 1938 0.4133 MSLADTDCSEEGSVILEPPDPDIIEIDPTARYFRYKEVIGKGAFKTVYKAFDEITGLEVAWSQVRIDEVLQSPGDLERLYSEVHLLRSLKHSNIVRFYNSWIDDKQRNVNMITELFTSGSLRQYRKKHKKVDMKAVKGWARQILMGLVYLHNHSPPIIHRDLKCDNIFINGHQGVVKIGDLGLATLLKQNNAKSVIGTPEFMAPELYDESYNELADIYSFGMCMLELATSEYPYRECRNSAQIYKKVSSGIKPVSLSKIKDPEIKSFIEKCLVPASQRLSAKELLMDPFLEVNGSIKSRPLPLPDIVLPKLRGFENRCLMSEGPASARIGSISMDLGDTNEQPLITVFYNSVDDAPPSPCIEIRRLVGGDRFFLKGEGNDVNSVSLVLRITNQCGRARNIHFIFYLDSDTAISVSKEMVEQLELAEHNVVFIAELIDLLLRTLVPDWKPCVAIDHLISPNGKRAHPSQQKHDSLLAKYKQNSVDYSQTVAEYVGHSTSNERLAEKENIDNLIFEEVLSHATNTNDLYSVTSHTSATSDYNDKNFSTVSFASARSGFTDFNLPTLNGWSQSSHASEVAASSDKKSKFPSIESNNVSFYESENELRIELEKVERQYQETMKDLTKRRHEAIMEIRKRLSQKKNTIIE 645
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g03149 645 Coils Coil 600 627 - -
Vifa2g03149 645 SMART serkin_6 33 290 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g03149 645 SUPERFAMILY Protein kinase-like (PK-like) 32 291 IPR011009 -
Vifa2g03149 645 Gene3D Transferase(Phosphotransferase) domain 1 116 297 - -
Vifa2g03149 645 FunFam Probable serine/threonine-protein kinase WNK1 18 114 - -
Vifa2g03149 645 ProSitePatterns Serine/Threonine protein kinases active-site signature. 157 169 IPR008271 GO:0004672|GO:0006468
Vifa2g03149 645 Gene3D Phosphorylase Kinase; domain 1 19 114 - -
Vifa2g03149 645 ProSiteProfiles Protein kinase domain profile. 33 290 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g03149 645 CDD STKc_WNK 31 290 - -
Vifa2g03149 645 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 21 634 - -
Vifa2g03149 645 Pfam Protein kinase domain 34 290 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g03149 645 Gene3D - 382 474 - -
Vifa2g03149 645 FunFam probable serine/threonine-protein kinase WNK9 116 295 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g03149 Vifa-Chr2 905359832 905362328 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g03149 133 505 MAP Kinase Kinase Kinase AT1G49160 61.818 3.46e-161 468
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WNK_NRBP Vifa2g03149 Pkinase 1.7e-52 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g03149 K08867 - gmx:121175054 907.131
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g03149 2 905359832 905362328 Vifa2g03149 2 905359832 905362328 ECH
Vifa2g03149 2 905359832 905362328 Vifa2g03149 2 905359832 905362328 PCT