Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g03148 ATGTCCTTTTCTCTTTCTAAACTCTACGGGATTCCTCCCGAGAAACTCACCTCAGAAGCTCCTGTTCCTATTTTAAGTTTGGCGGACACGGATTGCTCGGAGGAAGGTTCGGTGATTCTTGAGCCTCCAGATCCTGATATCATTGAAATTGATCCTACTGCTCGTTACTTTAGGTATAAGGAAGTAATTGGCAAAGGAGCTTTCAAGACTGTCTATAAGGCATTTGATGAAATCACGGGTCTTGAAGTTGCGTGGAGCCAAGTTCGGATTGACGAGGTATTACAATCACCGGGCGACCTAGAAAGGCTGTATTCAGAAGTGCATCTTTTGAGATCTTTGAAGCATAGTAACATTGTAAGGTTCTACAATTCCTGGATTGATGACAAGCAAAGGAATGTTAACATGATAACTGAGTTGTTCACCTCAGGGAGCCTGAGACAGTACCGAAAGAAACACAAGAAGGTTGACATGAAAGCGGTTAAAGGATGGGCAAGACAGATTTTGATGGGTTTAGTTTACCTCCACAATCATTCCCCGCCTATTATACATCGGGATCTCAAGTGTGATAATATATTTATCAATGGTCACCAAGGAGTCGTTAAGATCGGAGATCTCGGGTTGGCAACTCTCTTGAAGCAGAATAACGCCAAGAGTGTAATTGGAACTCCGGAGTTTATGGCGCCTGAACTCTACGATGAAAGTTATAATGAATTGGCCGACATATATTCTTTTGGAATGTGCATGTTGGAGTTGGCTACTTCCGAGTATCCTTACCGAGAATGTAGAAACTCTGCTCAGATATACAAGAAAGTTTCATCTGGCATAAAGCCGGTTTCTCTTTCTAAAATCAAAGATCCGGAAATAAAATCGTTTATTGAGAAATGTCTTGTCCCGGCATCTCAAAGATTGTCAGCGAAGGAGCTTCTGATGGACCCTTTTCTTGAAGTGAACGGTTCAATAAAGAGTCGCCCTCTTCCATTACCAGATATCGTTCTACCTAAACTCCGAGGCTTTGAGAATCGCTGTCTGATGTCAGAAGGTCCTGCTAGTGCACGAATTGGATCCATATCAATGGATCTTGGTGATACCAATGAGCAACCATTGATCACTGTGTTTTATAATTCTGTTGATGATGCACCACCTTCTCCGTGTATTGAGATACGGAGGTTGGTGGGAGGTGATAGATTTTTTCTCAAAGGTGAAGGAAATGACGTGAATTCCGTGTCATTAGTTCTCCGGATAACTAATCAGTGTGGGCGAGCAAGAAATATCCATTTCATATTCTACCTCGATAGTGATACAGCCATCTCGGTGTCAAAAGAAATGGTTGAGCAACTTGAACTTGCCGAGCACAATGTTGTTTTCATCGCCGAGTTGATTGATCTGTTACTGAGGACATTGGTTCCTGATTGGAAGCCTTGTGTAGCTATTGACCACTTAATTTCACCAAATGGTAAACGAGCTCATCCGAGCCAACAGAAACATGACTCGCTCTTGGCAAAATACAAGCAAAACTCTGTAGATTATAGCCAAACTGTGGCAGAATATGTTGGTCATTCAACCTCAAATGAGAGATTGGCCGAAAAAGAAAACATCGATAACTTGATTTTCGAAGAAGTTTTATCCCATGCAACCAACACAAATGATTTATATTCCGTGACATCACACACTTCAGCAACATCTGACTATAATGATAAGAATTTTTCAACAGTTTCATTCGCGTCTGCTAGGTCGGGATTCACAGACTTCAACTTACCAACATTGAATGGATGGAGTCAATCCTCGCATGCATCTGAGGTTGCGGCATCCTCTGATAAAAAGAGCAAGTTTCCGAGCATCGAAAGCAACAATGTCTCATTCTATGAATCTGAGAATGAGTTGAGAATAGAGTTAGAGAAAGTTGAACGGCAATATCAAGAGACAATGAAAGACTTAACCAAAAGAAGACATGAGGCCATCATGGAGATCAGAAAGAGGCTGTCACAAAAAAAAAACACAATCATAGAATAA 2010 0.4139 MSFSLSKLYGIPPEKLTSEAPVPILSLADTDCSEEGSVILEPPDPDIIEIDPTARYFRYKEVIGKGAFKTVYKAFDEITGLEVAWSQVRIDEVLQSPGDLERLYSEVHLLRSLKHSNIVRFYNSWIDDKQRNVNMITELFTSGSLRQYRKKHKKVDMKAVKGWARQILMGLVYLHNHSPPIIHRDLKCDNIFINGHQGVVKIGDLGLATLLKQNNAKSVIGTPEFMAPELYDESYNELADIYSFGMCMLELATSEYPYRECRNSAQIYKKVSSGIKPVSLSKIKDPEIKSFIEKCLVPASQRLSAKELLMDPFLEVNGSIKSRPLPLPDIVLPKLRGFENRCLMSEGPASARIGSISMDLGDTNEQPLITVFYNSVDDAPPSPCIEIRRLVGGDRFFLKGEGNDVNSVSLVLRITNQCGRARNIHFIFYLDSDTAISVSKEMVEQLELAEHNVVFIAELIDLLLRTLVPDWKPCVAIDHLISPNGKRAHPSQQKHDSLLAKYKQNSVDYSQTVAEYVGHSTSNERLAEKENIDNLIFEEVLSHATNTNDLYSVTSHTSATSDYNDKNFSTVSFASARSGFTDFNLPTLNGWSQSSHASEVAASSDKKSKFPSIESNNVSFYESENELRIELEKVERQYQETMKDLTKRRHEAIMEIRKRLSQKKNTIIE 669
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g03148 669 Gene3D - 406 497 - -
Vifa2g03148 669 FunFam probable serine/threonine-protein kinase WNK9 140 319 - -
Vifa2g03148 669 CDD STKc_WNK 55 314 - -
Vifa2g03148 669 Gene3D Phosphorylase Kinase; domain 1 43 138 - -
Vifa2g03148 669 ProSitePatterns Serine/Threonine protein kinases active-site signature. 181 193 IPR008271 GO:0004672|GO:0006468
Vifa2g03148 669 Gene3D Transferase(Phosphotransferase) domain 1 140 321 - -
Vifa2g03148 669 SUPERFAMILY Protein kinase-like (PK-like) 56 363 IPR011009 -
Vifa2g03148 669 FunFam Probable serine/threonine-protein kinase WNK1 42 138 - -
Vifa2g03148 669 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 44 658 - -
Vifa2g03148 669 Coils Coil 624 651 - -
Vifa2g03148 669 ProSiteProfiles Protein kinase domain profile. 57 314 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g03148 669 SMART serkin_6 57 314 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g03148 669 Pfam Protein kinase domain 58 314 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g03148 Vifa-Chr2 905359632 905362328 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g03148 157 524 MAP Kinase Kinase Kinase AT1G49160 63.315 8.76e-161 468
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WNK_NRBP Vifa2g03148 Pkinase 1.9e-52 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g03148 K08867 - gmx:121175054 905.975
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g03148 2 905359632 905362328 Vifa2g03148 2 905359632 905362328 ECH