Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g03142 ATGTATGCTACTACTTCCTTTGTTTCACCACTTCTTCATGACCTTGAAATTTTCCACTCTAGAAGGATGTTACTTCACTCTCCAATTAACCAACAATCAAATTTAGCTAACTCTCCAATTTCCACAAATATCCATGATTCAAGTAAAGAATCATCTTATCTTGGAGATGGTAATTTTGATGCAAATGTTGTTATGGTACTCTCTGTCCTATTATGTGCTCTTATTTGTTCACTTTGTTTGAACTCAATAATAAGATGTGCATTAAGGTGTTCTAATTTAGTTGTGACGAGTGGCGGTGGTGGTCATCACGCTAATACTCCAGCTCTAGCGACAAACACTGGAATCAAGAAGAAAGCTTTGAAGACATTCACTACGGTGAGTTATTCGGCCGAGTTGAATCTTCCGAGCTTGGACTTAGAGTGTGTGATATGCTTGTCAGAATTCACTAACGGAGATAAGGTCCGCCTTTTGCCGAAGTGTAACCACGGATTTCATGTTCGTTGTATTGACAAATGGCTATGTTCGCATTCATCATGTCCTAAATGTAGACAATGCCTTATTGAGACATGTAAAAAAATTGTTGGATCACAAGGTAGTTCATCTCAATTACCTCAGCCTATGTTGTTTCCAGTGCCAGAAACAATTGTAAGTATTGTGCCACTTGAACATGAAGGTTTGGTGAGAAACTATAGGGAGGTTAGCTAG 705 0.3858 MYATTSFVSPLLHDLEIFHSRRMLLHSPINQQSNLANSPISTNIHDSSKESSYLGDGNFDANVVMVLSVLLCALICSLCLNSIIRCALRCSNLVVTSGGGGHHANTPALATNTGIKKKALKTFTTVSYSAELNLPSLDLECVICLSEFTNGDKVRLLPKCNHGFHVRCIDKWLCSHSSCPKCRQCLIETCKKIVGSQGSSSQLPQPMLFPVPETIVSIVPLEHEGLVRNYREVS 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g03142 234 CDD RING-H2_EL5-like 140 183 - -
Vifa2g03142 234 PANTHER RING-H2 FINGER PROTEIN ATL78 16 226 IPR044602 GO:0016567|GO:0016740
Vifa2g03142 234 FunFam RING-H2 finger protein ATL73 103 188 - -
Vifa2g03142 234 ProSiteProfiles Zinc finger RING-type profile. 141 183 IPR001841 -
Vifa2g03142 234 SMART ring_2 141 182 IPR001841 -
Vifa2g03142 234 Pfam Ring finger domain 140 183 IPR001841 -
Vifa2g03142 234 SUPERFAMILY RING/U-box 120 188 - -
Vifa2g03142 234 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 100 187 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g03142 Vifa-Chr2 903964777 903965481 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g03142 36 187 C3H Transcription Factor Family AT3G10910 47.170 3.24e-42 140
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g03142 K19040 - gmx:100807227 314.694
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g03142 2 903964777 903965481 Vifa2g03142 2 903964777 903965481 ECH
Vifa1g06300 1 984880253 984880900 Vifa2g03142 2 903964777 903965481 ECH
Vifa2g03142 2 903964777 903965481 Vifa2g03142 2 903964777 903965481 PCT