Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vifa2g03142 | ATGTATGCTACTACTTCCTTTGTTTCACCACTTCTTCATGACCTTGAAATTTTCCACTCTAGAAGGATGTTACTTCACTCTCCAATTAACCAACAATCAAATTTAGCTAACTCTCCAATTTCCACAAATATCCATGATTCAAGTAAAGAATCATCTTATCTTGGAGATGGTAATTTTGATGCAAATGTTGTTATGGTACTCTCTGTCCTATTATGTGCTCTTATTTGTTCACTTTGTTTGAACTCAATAATAAGATGTGCATTAAGGTGTTCTAATTTAGTTGTGACGAGTGGCGGTGGTGGTCATCACGCTAATACTCCAGCTCTAGCGACAAACACTGGAATCAAGAAGAAAGCTTTGAAGACATTCACTACGGTGAGTTATTCGGCCGAGTTGAATCTTCCGAGCTTGGACTTAGAGTGTGTGATATGCTTGTCAGAATTCACTAACGGAGATAAGGTCCGCCTTTTGCCGAAGTGTAACCACGGATTTCATGTTCGTTGTATTGACAAATGGCTATGTTCGCATTCATCATGTCCTAAATGTAGACAATGCCTTATTGAGACATGTAAAAAAATTGTTGGATCACAAGGTAGTTCATCTCAATTACCTCAGCCTATGTTGTTTCCAGTGCCAGAAACAATTGTAAGTATTGTGCCACTTGAACATGAAGGTTTGGTGAGAAACTATAGGGAGGTTAGCTAG | 705 | 0.3858 | MYATTSFVSPLLHDLEIFHSRRMLLHSPINQQSNLANSPISTNIHDSSKESSYLGDGNFDANVVMVLSVLLCALICSLCLNSIIRCALRCSNLVVTSGGGGHHANTPALATNTGIKKKALKTFTTVSYSAELNLPSLDLECVICLSEFTNGDKVRLLPKCNHGFHVRCIDKWLCSHSSCPKCRQCLIETCKKIVGSQGSSSQLPQPMLFPVPETIVSIVPLEHEGLVRNYREVS | 234 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vifa2g03142 | 234 | CDD | RING-H2_EL5-like | 140 | 183 | - | - | |
Vifa2g03142 | 234 | PANTHER | RING-H2 FINGER PROTEIN ATL78 | 16 | 226 | IPR044602 | GO:0016567|GO:0016740 | |
Vifa2g03142 | 234 | FunFam | RING-H2 finger protein ATL73 | 103 | 188 | - | - | |
Vifa2g03142 | 234 | ProSiteProfiles | Zinc finger RING-type profile. | 141 | 183 | IPR001841 | - | |
Vifa2g03142 | 234 | SMART | ring_2 | 141 | 182 | IPR001841 | - | |
Vifa2g03142 | 234 | Pfam | Ring finger domain | 140 | 183 | IPR001841 | - | |
Vifa2g03142 | 234 | SUPERFAMILY | RING/U-box | 120 | 188 | - | - | |
Vifa2g03142 | 234 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 100 | 187 | IPR013083 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vifa2g03142 | Vifa-Chr2 | 903964777 | 903965481 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vifa2g03142 | 36 | 187 | C3H Transcription Factor Family | AT3G10910 | 47.170 | 3.24e-42 | 140 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vifa2g03142 | K19040 | - | gmx:100807227 | 314.694 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Vifa2g03142 | 2 | 903964777 | 903965481 | Vifa2g03142 | 2 | 903964777 | 903965481 | ECH | |
Vifa1g06300 | 1 | 984880253 | 984880900 | Vifa2g03142 | 2 | 903964777 | 903965481 | ECH | |
Vifa2g03142 | 2 | 903964777 | 903965481 | Vifa2g03142 | 2 | 903964777 | 903965481 | PCT |